Eukaryotic Ribosomal Internal Transcribed Spacer 1 Database

Other names: ITSoneDB, itsonedb

The Eukaryotic Ribosomal Internal Transcribed Spacer 1 Database (ITSoneDB) is a collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. It is intended to provide a curated reference database aimed at ITS1-based metagenomic surveys. Each ITS1 is mapped on the NCBI reference taxonomy with its start and end positions precisely annotated. ITSoneDB has been developed in agreement to the FAIR guidelines by enabling the users to query and download its content through a simple web-interface and access relevant metadata by cross-linking to European Nucleotide Archive.

Webpage:
http://itsonedb.cloud.ba.infn.it/index.jsp

Publications:

Tags:

genome annotation hidden markov model metagenome ribosomal rna metagenomics

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