DyNet
DyNet is a Cytoscape application that provides a range of functionalities for the visualization, realtime synchronization, and analysis of large multi-state dynamic molecular interaction networks enabling users to quickly identify and analyze the most 'rewired' nodes across many network states.
Description
More detailed information about this field from each metasource.
DyNet is a Cytoscape application that provides a range of functionalities for the visualization, realtime synchronization, and analysis of large multi-state dynamic molecular interaction networks enabling users to quickly identify and analyze the most 'rewired' nodes across many network states.
metasource: Fairsharing.orgversion: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Webpage:
http://apps.cytoscape.org/apps/dynetWebpage
More detailed information about this field from each metasource.
http://apps.cytoscape.org/apps/dynet
metasource: Fairsharing.orgversion: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
DyNet: visualization and analysis of dynamic molecular interaction networks
PMID: 27153624
metasource: Fairsharing.org
version: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
DyNet: visualization and analysis of dynamic molecular interaction networks
PMID: 27153624
metasource: Fairsharing.org
version: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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DyNet: visualization and analysis of dynamic molecular interaction networks
PubMed citations: 46.
46 articles citing: DyNet: visualization and analysis of dynamic molecular interaction networks
Evolution of miRNA-Binding Sites and Regulatory Networks in Cichlids. PMID:35748824
The Leaf Microbiome of Arabidopsis Displays Reproducible Dynamics and Patterns throughout the Growing Season. PMID:35420486
Mitofusin2 Promotes β Cell Maturation from Mouse Embryonic Stem Cells via Sirt3/Idh2 Activation. PMID:35386849
Reactive nitrogen restructures and weakens microbial controls of soil N2O emissions. PMID:35347224
Dynamic transcriptional reprogramming leads to immunotherapeutic vulnerabilities in myeloma. PMID:34675390
Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation. PMID:34609518
Dynamic co-expression modular network analysis in nonalcoholic fatty liver disease. PMID:34419146
Network and co-expression analysis of airway smooth muscle cell transcriptome delineates potential gene signatures in asthma. PMID:34257337
Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs). PMID:34211067
Death Processes in Bovine Theca and Granulosa Cells Modelled and Analysed Using a Systems Biology Approach. PMID:34063056
In silico comparative analysis of LRRK2 interactomes from brain, kidney and lung. PMID:33915162
Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations. PMID:33823788
Comparison of SYK Signaling Networks Reveals the Potential Molecular Determinants of Its Tumor-Promoting and Suppressing Functions. PMID:33670716
Cerebrum, liver, and muscle regulatory networks uncover maternal nutrition effects in developmental programming of beef cattle during early pregnancy. PMID:33531552
Evolution of regulatory networks associated with traits under selection in cichlids. PMID:33419455
SARS-Cov-2 Interactome with Human Ghost Proteome: A Neglected World Encompassing a Wealth of Biological Data. PMID:33352703
A Multi-Network Comparative Analysis of Transcriptome and Translatome Identifies Novel Hub Genes in Cardiac Remodeling. PMID:33304386
Metabolic Profiles of Whole Serum and Serum-Derived Exosomes Are Different in Head and Neck Cancer Patients Treated by Radiotherapy. PMID:33203021
Connecting the dots on vertical transmission of SARS-CoV-2 using protein-protein interaction network analysis - Potential roles of placental ACE2 and ENDOU. PMID:33197855
Human Histone Interaction Networks: An Old Concept, New Trends. PMID:33098859
Comparative Study of Pine Reference Genomes Reveals Transposable Element Interconnected Gene Networks. PMID:33081418
Investigating the Transition of Pre-Symptomatic to Symptomatic Huntington's Disease Status Based on Omics Data. PMID:33049985
Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts. PMID:32714292
Transcriptome and Network Analyses of Heterostyly in Turnera subulata Provide Mechanistic Insights: Are S-Loci a Red-Light for Pistil Elongation? PMID:32503265
Aligning functional network constraint to evolutionary outcomes. PMID:32448114
NetConfer: a web application for comparative analysis of multiple biological networks. PMID:32430035
Edgetic perturbation signatures represent known and novel cancer biomarkers. PMID:32152446
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D. PMID:31980649
A Robust Gene Expression Prognostic Signature for Overall Survival in High-Grade Serous Ovarian Cancer. PMID:31885574
Comparative analysis of differential proteome-wide protein-protein interaction network of Methanobrevibacter ruminantium M1. PMID:31763465
Biomarker discovery in inflammatory bowel diseases using network-based feature selection. PMID:31756219
Differential regulatory network-based quantification and prioritization of key genes underlying cancer drug resistance based on time-course RNA-seq data. PMID:31682596
DynOVis: a web tool to study dynamic perturbations for capturing dose-over-time effects in biological networks. PMID:31409281
Spatial and temporal localization of immune transcripts defines hallmarks and diversity in the tuberculosis granuloma. PMID:31015452
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. PMID:30999855
Integration of transcriptomic data in a genome-scale metabolic model to investigate the link between obesity and breast cancer. PMID:30999849
SyNDI: synchronous network data integration framework. PMID:30400817
DiNAR: revealing hidden patterns of plant signalling dynamics using Differential Network Analysis in R. PMID:30186360
Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3. PMID:29730990
A Structured Workflow for Mapping Human Sin3 Histone Deacetylase Complex Interactions Using Halo-MudPIT Affinity-Purification Mass Spectrometry. PMID:29599190
A robust gene expression-based prognostic risk score predicts overall survival of lung adenocarcinoma patients. PMID:29467935
The DifferentialNet database of differential protein-protein interactions in human tissues. PMID:29069447
Equine skeletal muscle adaptations to exercise and training: evidence of differential regulation of autophagosomal and mitochondrial components. PMID:28793853
Protein network construction using reverse phase protein array data. PMID:28651964
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks. PMID:28521733
Little Cigars are More Toxic than Cigarettes and Uniquely Change the Airway Gene and Protein Expression. PMID:28447619
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More detailed information about this field from each metasource.
network model
metasource: Fairsharing.org
version: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
network simulation
metasource: Fairsharing.org
version: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Tags
More detailed information about this field from each metasource.
network model
metasource: Fairsharing.orgversion: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
network simulation
metasource: Fairsharing.orgversion: FAIRsharing.org: DyNet; DyNet; DOI: https://doi.org/10.25504/FAIRsharing.q70amd; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
network model network simulation
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