CropPAL
Names
More detailed information about this field from each metasource.
CropPAL
metasource: Fairsharing.org
version: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cropPAL
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:00.403206
croppal
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:00.403206
Names
More detailed information about this field from each metasource.
CropPAL
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cropPAL
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
croppal
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
Names
More detailed information about this field from each metasource.
CropPAL
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cropPAL
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
croppal
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
The compendium of crop Proteins with Annotated Locations (cropPAL) collates more than 550 data sets from previously published fluorescent tagging or mass spectrometry studies and eight pre-computed subcellular predictions for barley, wheat, rice and maize proteomes. The data collection including metadata for proteins and studies can be accessed through the search portal. The reciprocal blast and EnsemblPLants homology tree allows the search for location data across the four crop species as well as compares it to Arabidopsis data from SUBA.
Description
More detailed information about this field from each metasource.
The compendium of crop Proteins with Annotated Locations (cropPAL) collates more than 550 data sets from previously published fluorescent tagging or mass spectrometry studies and eight pre-computed subcellular predictions for barley, wheat, rice and maize proteomes. The data collection including metadata for proteins and studies can be accessed through the search portal. The reciprocal blast and EnsemblPLants homology tree allows the search for location data across the four crop species as well as compares it to Arabidopsis data from SUBA.
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
A data portal to access the compendium of data on crop protein subcellular locations.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
Webpage:
http://crop-pal.org/Webpage
More detailed information about this field from each metasource.
http://crop-pal.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:00.403206
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CC-BY-4.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)
PMID: 26556651
metasource: Fairsharing.org
version: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/pcp/pcv170
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:00.403206
Publications
More detailed information about this field from each metasource.
Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)
PMID: 26556651
metasource: Fairsharing.org
version: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/pcp/pcv170
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
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Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)
PubMed citations: 23.
23 articles citing: Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)
Comparative Transcriptomic Analyses of Nitrate-Response in Rice Genotypes With Contrasting Nitrogen Use Efficiency Reveals Common and Genotype-Specific Processes, Molecular Targets and Nitrogen Use Efficiency-Candidates. PMID:35774823
Identification of plant vacuole proteins by exploiting deep representation learning features. PMID:35765653
Subcellular Proteomics as a Unified Approach of Experimental Localizations and Computed Prediction Data for Arabidopsis and Crop Plants. PMID:35113396
Nitrate-responsive transcriptome analysis reveals additional genes/processes and associated traits viz. height, tillering, heading date, stomatal density and yield in japonica rice. PMID:35038039
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
Protein turnover in the developing Triticum aestivum grain. PMID:34846755
The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses. PMID:34685978
Sorghum's Whole-Plant Transcriptome and Proteome Responses to Drought Stress: A Review. PMID:34357076
Meta-Analysis of Yield-Related and N-Responsive Genes Reveals Chromosomal Hotspots, Key Processes and Candidate Genes for Nitrogen-Use Efficiency in Rice. PMID:34168661
Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network. PMID:33462256
Arabidopsis antibody resources for functional studies in plants. PMID:33319797
Barley Root Proteome and Metabolome in Response to Cytokinin and Abiotic Stimuli. PMID:33250914
Conserved and Opposite Transcriptome Patterns during Germination in Hordeum vulgare and Arabidopsis thaliana. PMID:33036486
Plastid transit peptides-where do they come from and where do they all belong? Multi-genome and pan-genomic assessment of chloroplast transit peptide evolution. PMID:32913678
Genome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants. PMID:32427841
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
Roles of membrane transporters: connecting the dots from sequence to phenotype. PMID:31162525
Cytonuclear Coevolution following Homoploid Hybrid Speciation in Aegilops tauschii. PMID:30445640
MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants. PMID:29875778
Multiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples. PMID:29024340
A Proteomic View on the Role of Legume Symbiotic Interactions. PMID:28769967
LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell. PMID:28300209
SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations. PMID:27899614 - http://dx.doi.org/10.1093/pcp/pcv170
Tags:
Tags
More detailed information about this field from each metasource.
cellular localization
metasource: Fairsharing.org
version: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
mass spectrometry spectra
metasource: Fairsharing.org
version: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:00.403206
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:00.403206
Tags
More detailed information about this field from each metasource.
cellular localization
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
mass spectrometry spectra
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: CropPAL; CropPAL; DOI: https://doi.org/10.25504/FAIRsharing.p7btsb; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:00.403206
cellular localization mass spectrometry spectra protein proteomics plant biology
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