Other names: qptm
An updated database for PTM dynamics in human, mouse, rat and yeast.
protein modifications proteomics sequence analysis model organisms proteomics experiment
dbPTM is a databases which accumulates the biological information related to protein post-translational modification (PTM), such as the catalytic sites, structural information, solvent accessibility o ...
BoMiProt is a manually curated, comprehensive repository of published information of bovine milk proteins.
A Functional Analysis Tools for Post-translational Modifications (FAT-PTM) database, which supports data from publicly available proteomic analyses encompassing eight different types of PTMs and over ...
ExVe is the knowledge base of orthologous proteins identified in fungal extracellular vesicles.
An integrative database of the expression dynamics of proteins in response to hypoxia in animals.
An integrative database of quantitative post-translational modifications in plants.
A comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotic species.
Phosphorylation sites in various species identified by mass spectrometry
The Postsynaptic Interaction Database is a comprehensive resource of the human postsynaptic (PS) binary protein-protein interactions. It contains experimental and computational evidence about interact ...
The Dynamic Proteomics database is a compendium of endogenously YFP-tagged human proteins and their time-lapse microscopy movies. These movies show the protein dynamics in space and in time in individ ...
Sequences and properties of Piwi-interacting RNAs (piRNAs) in human, mouse and rat
an annotated database of protein associations. Tabloid Proteome is a database of protein association network generated using publically available mass spectrometry based experiments in PRIDE.These as ...
Database of essential genes from bacteria and yeast
Database of protein orthologs that interact (interologs) and proteins with conserved regulatory relationships across species (regulogs). Contains data for C. elegans, Drosophila, Arabidopsis, and Yeas ...
Repository and statistical tools for directly determined PTM crosstalk based on long peptides measured by mass spectrometry. Focus on histone proteins.
Deep Proteome Profiling Enabled Functional Annotation and Data-Independent Quantification of Proline Hydroxylation Targets.
The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-li ...
MIAPE attempts to define the minimum set of information about whole proteomics experiments that would be required by a public repository.
Mass-spectrometry-based proteomics data for human, yeast, E.coli and Mycobacterium
Unimod is a community-supported, comprehensive database of protein modifications for mass spectrometry applications. The aim is to provide accurate and verifiable values, derived from elemental compos ...