Single-molecule mapping of replisome progression.
PMID:35240057
Exceptional origin activation revealed by comparative analysis in two laboratory yeast strains.
PMID:35157703
The asymmetric distribution of RNA polymerase II and nucleosomes on replicated daughter genomes is caused by differences in replication timing between the lagging and the leading strand.
PMID:35042724
Conservation of a DNA Replication Motif among Phylogenetically Distant Budding Yeast Species.
PMID:34132803
Who gets a license: DNA synthesis in quiescent cells re-entering the cell cycle.
PMID:33682029
Chromatin structure restricts origin utilization when quiescent cells re-enter the cell cycle.
PMID:33367871
High density of unrepaired genomic ribonucleotides leads to Topoisomerase 1-mediated severe growth defects in absence of ribonucleotide reductase.
PMID:32187369
Investigating eukaryotic cells with cryo-ET.
PMID:31935172
Stochasticity of replication forks' speeds plays a key role in the dynamics of DNA replication.
PMID:31869320
Comprehensive Analysis of Replication Origins in Saccharomyces cerevisiae Genomes.
PMID:31572328
Recent Advances on the Machine Learning Methods in Identifying DNA Replication Origins in Eukaryotic Genomics.
PMID:30619452
Budding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks.
PMID:30104203
Nucleosome occupancy as a novel chromatin parameter for replication origin functions.
PMID:27895110
How MCM loading and spreading specify eukaryotic DNA replication initiation sites.
PMID:27635237
iOri-Human: identify human origin of replication by incorporating dinucleotide physicochemical properties into pseudo nucleotide composition.
PMID:27626500
Dynamics of Nucleosome Positioning Maturation following Genomic Replication.
PMID:27568571
Chromatin dynamics during DNA replication.
PMID:27225843
Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast.
PMID:26945028
Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation.
PMID:26212319
A Major Role of DNA Polymerase δ in Replication of Both the Leading and Lagging DNA Strands.
PMID:26145172
Mcm2-7 Is an Active Player in the DNA Replication Checkpoint Signaling Cascade via Proposed Modulation of Its DNA Gate.
PMID:25870112
Recent advances in the genome-wide study of DNA replication origins in yeast.
PMID:25745419
Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes.
PMID:25635677
Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription.
PMID:25609572
Genome-wide chromatin footprinting reveals changes in replication origin architecture induced by pre-RC assembly.
PMID:25593310
At short telomeres Tel1 directs early replication and phosphorylates Rif1.
PMID:25329891
Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program.
PMID:25288172
High resolution mapping of modified DNA nucleobases using excision repair enzymes.
PMID:25015380
Budding yeast for budding geneticists: a primer on the Saccharomyces cerevisiae model system.
PMID:24807111
Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression.
PMID:24740181
Reversible Top1 cleavage complexes are stabilized strand-specifically at the ribosomal replication fork barrier and contribute to ribosomal DNA stability.
PMID:24574527
Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex.
PMID:24532715
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells.
PMID:24487582
An autonomously replicating sequence for use in a wide range of budding yeasts.
PMID:24205893
Stochastic association of neighboring replicons creates replication factories in budding yeast.
PMID:24062338
A DNA sequence element that advances replication origin activation time in Saccharomyces cerevisiae.
PMID:24022751
Quantitative, genome-wide analysis of eukaryotic replication initiation and termination.
PMID:23562327
High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast.
PMID:23241746
Chromatin-dependent and -independent regulation of DNA replication origin activation in budding yeast.
PMID:23222539
Analysis of stress-induced duplex destabilization (SIDD) properties of replication origins, genes and intergenes in the fission yeast, Schizosaccharomyces pombe.
PMID:23163955
Asymmetry indices for analysis and prediction of replication origins in eukaryotic genomes.
PMID:23028755
Conservation of replication timing reveals global and local regulation of replication origin activity.
PMID:22767388
Maintaining replication origins in the face of genomic change.
PMID:22665441
Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae.
PMID:22589733
Genome-wide identification and characterization of replication origins by deep sequencing.
PMID:22531001
Intrinsic coupling of lagging-strand synthesis to chromatin assembly.
PMID:22419157
Optimal placement of origins for DNA replication.
PMID:22400964
Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype.
PMID:22234187
dNTP pools determine fork progression and origin usage under replication stress.
PMID:22234185
OriDB, the DNA replication origin database updated and extended.
PMID:22121216
Databases and bioinformatics tools for the study of DNA repair.
PMID:22091405
Do replication forks control late origin firing in Saccharomyces cerevisiae?
PMID:22086957
Dynamics of DNA replication in yeast.
PMID:21902372
Initiation of DNA replication: functional and evolutionary aspects.
PMID:21508040
The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation.
PMID:21441303
Nuclear mitochondrial DNA activates replication in Saccharomyces cerevisiae.
PMID:21408151
Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control.
PMID:21364325
From sequence to function: Insights from natural variation in budding yeasts.
PMID:21320572
Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum?
PMID:21037857
Analysis of replication profiles reveals key role of RFC-Ctf18 in yeast replication stress response.
PMID:20972444
Relicensing of transcriptionally inactivated replication origins in budding yeast.
PMID:20962350
Genome-wide model for the normal eukaryotic DNA replication fork.
PMID:20876092
Gene-specific RNA polymerase II phosphorylation and the CTD code.
PMID:20835241
Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure.
PMID:20824081
Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing.
PMID:20739926
G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae.
PMID:20676380
Replication stress checkpoint signaling controls tRNA gene transcription.
PMID:20639887
The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.
PMID:20595233
A comprehensive genome-wide map of autonomously replicating sequences in a naive genome.
PMID:20485513
Mathematical modelling of whole chromosome replication.
PMID:20457753
Fragile genomic sites are associated with origins of replication.
PMID:20333204
GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome.
PMID:20212525
Mathematical modelling of eukaryotic DNA replication.
PMID:20205354
Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX.
PMID:20139982
Defining replication origin efficiency using DNA fiber assays.
PMID:20039120
The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication.
PMID:19997491
Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression.
PMID:19888207
Strategies for analyzing highly enriched IP-chip datasets.
PMID:19772646
The S-phase checkpoint is required to respond to R-loops accumulated in THO mutants.
PMID:19651896
Hidden chromosome symmetry: in silico transformation reveals symmetry in 2D DNA walk trajectories of 671 chromosomes.
PMID:19636424
H3 k36 methylation helps determine the timing of cdc45 association with replication origins.
PMID:19521516
Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome.
PMID:19436716
Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae.
PMID:19417103
A model for the spatiotemporal organization of DNA replication in Saccharomyces cerevisiae.
PMID:19306105
The temporal program of chromosome replication: genomewide replication in clb5{Delta} Saccharomyces cerevisiae.
PMID:18832352
Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast.
PMID:18786274
Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site.
PMID:18573888
Division of labor at the eukaryotic replication fork.
PMID:18439893
ATP-dependent chromatin remodeling shapes the DNA replication landscape.
PMID:18408730
Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase.
PMID:17978089
Identification of mutations that decrease the stability of a fragment of Saccharomyces cerevisiae chromosome III lacking efficient replicators.
PMID:17720931
Cell cycle regulation of DNA replication.
PMID:17630848
Linear derivatives of Saccharomyces cerevisiae chromosome III can be maintained in the absence of autonomously replicating sequence elements.
PMID:17452442