TargetTrack
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TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structure determination.
Description
More detailed information about this field from each metasource.
TargetTrack, a target registration database, provides information on the experimental progress and status of targets selected for structure determination.
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://sbkb.org/tt/Webpage
More detailed information about this field from each metasource.
http://sbkb.org/tt/
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
TargetDB: a target registration database for structural genomics projects
PMID: 15130928
metasource: Fairsharing.org
version: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
TargetDB: a target registration database for structural genomics projects
PMID: 15130928
metasource: Fairsharing.org
version: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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TargetDB: a target registration database for structural genomics projects
PubMed citations: 91.
91 articles citing: TargetDB: a target registration database for structural genomics projects
Crystals of TELSAM-target protein fusions that exhibit minimal crystal contacts and lack direct inter-TELSAM contacts. PMID:35232248
Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites. PMID:34610008
From Genome to Drugs: New Approaches in Antimicrobial Discovery. PMID:34177572
Structural genomics and the Protein Data Bank. PMID:33957120
TISIGNER.com: web services for improving recombinant protein production. PMID:33744969
Solubility-Weighted Index: fast and accurate prediction of protein solubility. PMID:32559287
Establishing synthesis pathway-host compatibility via enzyme solubility. PMID:30802311
The TMCrys server for supporting crystallization of transmembrane proteins. PMID:30793168
TMCrys: predict propensity of success for transmembrane protein crystallization. PMID:29718100
A statistical model for improved membrane protein expression using sequence-derived features. PMID:29378850
Target-Pathogen: a structural bioinformatic approach to prioritize drug targets in pathogens. PMID:29106651
Survey of Predictors of Propensity for Protein Production and Crystallization with Application to Predict Resolution of Crystal Structures. PMID:28933304
The "Sticky Patch" Model of Crystallization and Modification of Proteins for Enhanced Crystallizability. PMID:28573570
Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity. PMID:28334201
TSTMP: target selection for structural genomics of human transmembrane proteins. PMID:27924015
A pipeline for structure determination of in vivo-grown crystals using in cellulo diffraction. PMID:27050136
PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies. PMID:27039071
The impact of structural genomics: the first quindecennial. PMID:26935210
Computational crystallization. PMID:26792536
Predicting Crystallization Propensity of Proteins from Arabidopsis Thaliana. PMID:26604856
Analysis of crystallization data in the Protein Data Bank. PMID:26457511
JPred4: a protein secondary structure prediction server. PMID:25883141
The accurate assessment of small-angle X-ray scattering data. PMID:25615859
Protein structure annotation resources. PMID:25502191
Covering complete proteomes with X-ray structures: a current snapshot. PMID:25372670
PredPPCrys: accurate prediction of sequence cloning, protein production, purification and crystallization propensity from protein sequences using multi-step heterogeneous feature fusion and selection. PMID:25148528
Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms. PMID:24988076
A review of machine learning methods to predict the solubility of overexpressed recombinant proteins in Escherichia coli. PMID:24885721
Improving the chances of successful protein structure determination with a random forest classifier. PMID:24598732
Selecting targets from eukaryotic parasites for structural genomics and drug discovery. PMID:24590708
Data management in the modern structural biology and biomedical research environment. PMID:24590705
Soluble expression of proteins correlates with a lack of positively-charged surface. PMID:24276756
Quantification of the impact of PSI:Biology according to the annotations of the determined structures. PMID:24139526
Discrimination of soluble and aggregation-prone proteins based on sequence information. PMID:23440081
Utilization of protein intrinsic disorder knowledge in structural proteomics. PMID:23232152
Assessing the accuracy of template-based structure prediction metaservers by comparison with structural genomics structures. PMID:23086054
PROSPERO: online prediction of crystallographic success from experimental results and sequence. PMID:22675232
High-throughput characterization of intrinsic disorder in proteins from the Protein Structure Initiative. PMID:22651963
Lessons from high-throughput protein crystallization screening: 10 years of practical experience. PMID:22646073
Structural genomics plucks high-hanging membrane proteins. PMID:22622032
Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli. PMID:22587847
Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni. PMID:22403005
Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome. PMID:22354707
Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal. PMID:22323219
Sequence-based classification using discriminatory motif feature selection. PMID:22102890
Computational approaches to selecting and optimising targets for structural biology. PMID:21906678
Sequence-based prediction of protein crystallization, purification and production propensity. PMID:21685077
What's in a drop? Correlating observations and outcomes to guide macromolecular crystallization experiments. PMID:21643490
Recording information on protein complexes in an information management system. PMID:21605682
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. PMID:21472436
Small angle X-ray scattering as a complementary tool for high-throughput structural studies. PMID:21462184
The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory. PMID:21460443
Preparation of protein samples for NMR structure, function, and small-molecule screening studies. PMID:21371586
PSI:Biology-materials repository: a biologist's resource for protein expression plasmids. PMID:21360289
XANNpred: neural nets that predict the propensity of a protein to yield diffraction-quality crystals. PMID:21246630
The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role. PMID:20944206
Disease risk of missense mutations using structural inference from predicted function. PMID:20887259
A protein sequence meta-functional signature for calcium binding residue prediction. PMID:20824111
TOPSAN: a collaborative annotation environment for structural genomics. PMID:20716366
Learning to predict expression efficacy of vectors in recombinant protein production. PMID:20122193
The crystal structure and activity of a putative trypanosomal nucleoside phosphorylase reveal it to be a homodimeric uridine phosphorylase. PMID:20070944
Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community. PMID:19906724
CRYSTALP2: sequence-based protein crystallization propensity prediction. PMID:19646256
Benefits of structural genomics for drug discovery research. PMID:19594422
Structural genomics is the largest contributor of novel structural leverage. PMID:19194785
Case-controlled structure validation. PMID:19171969
Automated protein structure calculation from NMR data. PMID:19137264
Data deposition and annotation at the worldwide protein data bank. PMID:19082769
Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data. PMID:19079241
The protein structure initiative structural genomics knowledgebase. PMID:19010965
Genome pool strategy for structural coverage of protein families. PMID:19000818
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications. PMID:18831785
The Jpred 3 secondary structure prediction server. PMID:18463136
TarO: a target optimisation system for structural biology. PMID:18385152
A graphical approach to tracking and reporting target status in structural genomics. PMID:18236171
The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation. PMID:18197987
Polymer-driven crystallization. PMID:17962407
The challenge of protein structure determination--lessons from structural genomics. PMID:17962404
Structural genomics: keeping up with expanding knowledge of the protein universe. PMID:17587562
StrBioLib: a Java library for development of custom computational structural biology applications. PMID:17537750
Growth of novel protein structural data. PMID:17360626
Towards fully automated structure-based function prediction in structural genomics: a case study. PMID:17316683
WormBase: new content and better access. PMID:17099234
A fast SCOP fold classification system using content-based E-Predict algorithm. PMID:16872501
Structural proteomics of minimal organisms: conservation of protein fold usage and evolutionary implications. PMID:16566839
PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics. PMID:16460560
The RCSB PDB information portal for structural genomics. PMID:16381872
PubNet: a flexible system for visualizing literature derived networks. PMID:16168087
Functional coverage of the human genome by existing structures, structural genomics targets, and homology models. PMID:16118666
Pilot studies on the parallel production of soluble mouse proteins in a bacterial expression system. PMID:15965734
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. PMID:15608185
Tags:
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
region
metasource: Fairsharing.org
version: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
region
metasource: Fairsharing.orgversion: FAIRsharing.org: TargetTrack; TargetTrack; DOI: https://doi.org/10.25504/FAIRsharing.2p1gn5; Last edited: April 26, 2021, 2:58 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
molecular structure structure region
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