SIDDBase
SIDDBASE (http://www.genomecenter.ucdavis.edu/benham/siddbase) is a database of stress induced DNA destabilization (SIDD) properties of various complete microbial genomes. SIDD sites are locations in genomic DNA which are predicted to become susceptible to duplex strand separation under supehelical stress. This is a potentially important DNA structural property, which is known to be involved in several regulatory mechanisms. Specific SIDD sites play important roles in transcriptional regulation, replication, chromosomal matrix attachment and other biological processes. This structural approach is an alternative to the usual DNA lexical content analysis. It is also fundamentally different from DNA thermal stability which only considers local thermodynamic stability or A+T content. The SIDDBASE database currently contains SIDD profiles of 138 prokaryotic and archaeal genomes. It can be queried by the genome, and then either by chromosomal location or gene name.
Description
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SIDDBASE (http://www.genomecenter.ucdavis.edu/benham/siddbase) is a database of stress induced DNA destabilization (SIDD) properties of various complete microbial genomes. SIDD sites are locations in genomic DNA which are predicted to become susceptible to duplex strand separation under supehelical stress. This is a potentially important DNA structural property, which is known to be involved in several regulatory mechanisms. Specific SIDD sites play important roles in transcriptional regulation, replication, chromosomal matrix attachment and other biological processes. This structural approach is an alternative to the usual DNA lexical content analysis. It is also fundamentally different from DNA thermal stability which only considers local thermodynamic stability or A+T content. The SIDDBASE database currently contains SIDD profiles of 138 prokaryotic and archaeal genomes. It can be queried by the genome, and then either by chromosomal location or gene name.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://benham.genomecenter.ucdavis.edu/Webpage
More detailed information about this field from each metasource.
http://benham.genomecenter.ucdavis.edu/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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