PespotDB
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Web resource designed to provide a central repository for the storage and the analysis of data on domain peptide recognition obtained with interaction assays exploiting peptide chip technology.
Description
More detailed information about this field from each metasource.
Web resource designed to provide a central repository for the storage and the analysis of data on domain peptide recognition obtained with interaction assays exploiting peptide chip technology.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:51.239393
Webpage:
http://mint.bio.uniroma2.it/PepspotDBWebpage
More detailed information about this field from each metasource.
http://mint.bio.uniroma2.it/PepspotDB
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:51.239393
Publications:
Publications
More detailed information about this field from each metasource.
The SH2 domain interaction landscape
PMID: 23545499
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:51.239393
The protein interaction network mediated by human SH3 domains
PMID: 21740962
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:51.239393
Publications
More detailed information about this field from each metasource.
The SH2 domain interaction landscape
PMID: 23545499
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:51.239393
The protein interaction network mediated by human SH3 domains
PMID: 21740962
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:51.239393
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The SH2 domain interaction landscape
PubMed citations: 53.
53 articles citing: The SH2 domain interaction landscape
Function of SYDE C2-RhoGAP family as signaling hubs for neuronal development deduced by computational analysis. PMID:35279680
Targeting Oncogenic Src Homology 2 Domain-Containing Phosphatase 2 (SHP2) by Inhibiting Its Protein-Protein Interactions. PMID:34714648
The intracellular domains of the EphB6 and EphA10 receptor tyrosine pseudokinases function as dynamic signalling hubs. PMID:34431498
EGFRAP encodes a new negative regulator of the EGFR acting in both normal and oncogenic EGFR/Ras-driven tissue morphogenesis. PMID:34411095
Biomolecular condensates at sites of DNA damage: More than just a phase. PMID:34311273
Peptide array-based interactomics. PMID:33942139
PLCγ1 promotes phase separation of T cell signaling components. PMID:33929486
Protocol for Peptide Synthesis on Spectrally Encoded Beads for MRBLE-pep Assays. PMID:33659339
Cytoplasmic short linear motifs in ACE2 and integrin β3 link SARS-CoV-2 host cell receptors to mediators of endocytosis and autophagy. PMID:33436498
Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications. PMID:33436497
Towards a unified open access dataset of molecular interactions. PMID:33262342
B7-H6 Promotes Cell Proliferation, Migration and Invasion of Non-Hodgkin Lymphoma via Ras/MEK/ERK Pathway Based on Quantitative Phosphoproteomics Data. PMID:32606790
The GTPase-activating protein p120RasGAP has an evolutionarily conserved "FLVR-unique" SH2 domain. PMID:32540970
New analysis pipeline for high-throughput domain-peptide affinity experiments improves SH2 interaction data. PMID:32540967
Comparative Molecular Transporter Properties of Cyclic Peptides Containing Tryptophan and Arginine Residues Formed through Disulfide Cyclization. PMID:32498339
GPS-PBS: A Deep Learning Framework to Predict Phosphorylation Sites that Specifically Interact with Phosphoprotein-Binding Domains. PMID:32443803
Structural Determinants of Phosphopeptide Binding to the N-Terminal Src Homology 2 Domain of the SHP2 Phosphatase. PMID:32395997
Biophysical prediction of protein-peptide interactions and signaling networks using machine learning. PMID:31907444
Deletion of the Tensin2 SH2-PTB domain, but not the loss of its PTPase activity, induces podocyte injury in FVB/N mouse strain. PMID:31723089
ELM-the eukaryotic linear motif resource in 2020. PMID:31680160
Dynalogo: an interactive sequence logo with dynamic thresholding of matched quantitative proteomic data. PMID:31609429
Quantitative mapping of protein-peptide affinity landscapes using spectrally encoded beads. PMID:31282865
Tyrosine Phosphorylation as a Widespread Regulatory Mechanism in Prokaryotes. PMID:31262836
Deciphering the Roles of N-Glycans on Collagen-Platelet Interactions. PMID:31055923
Phosphorylated tyrosine 93 of hepatitis C virus nonstructural protein 5A is essential for interaction with host c-Src and efficient viral replication. PMID:30862675
Nuclear import of the DSCAM-cytoplasmic domain drives signaling capable of inhibiting synapse formation. PMID:30745319
Monitoring activities of receptor tyrosine kinases using a universal adapter in genetically encoded split TEV assays. PMID:30623207
Surface Loops in a Single SH2 Domain Are Capable of Encoding the Spectrum of Specificity of the SH2 Family. PMID:30482845
Functional characterization of phospholipase C-γ2 mutant protein causing both somatic ibrutinib resistance and a germline monogenic autoinflammatory disorder. PMID:30344948
Interactome Mapping Uncovers a General Role for Numb in Protein Kinase Regulation. PMID:29217616
Src homology 2 domains enhance tyrosine phosphorylation in vivo by protecting binding sites in their target proteins from dephosphorylation. PMID:29162725
T Cell Costimulation by CD6 Is Dependent on Bivalent Binding of a GADS/SLP-76 Complex. PMID:28289074
Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases. PMID:28159843
Quantitative GTPase Affinity Purification Identifies Rho Family Protein Interaction Partners. PMID:27852748
Time-resolved multimodal analysis of Src Homology 2 (SH2) domain binding in signaling by receptor tyrosine kinases. PMID:27071344
Phase separation of signaling molecules promotes T cell receptor signal transduction. PMID:27056844
The discovery of modular binding domains: building blocks of cell signalling. PMID:26420231
High-throughput methods for identification of protein-protein interactions involving short linear motifs. PMID:26297553
Landscape of protein domain interactome. PMID:25960191
Towards the computational design of protein post-translational regulation. PMID:25956846
Use of mechanistic models to integrate and analyze multiple proteomic datasets. PMID:25863072
Phospho-tyrosine dependent protein-protein interaction network. PMID:25814554
MARQUIS: a multiplex method for absolute quantification of peptides and posttranslational modifications. PMID:25581283
Iterative tyrosine phosphorylation controls non-canonical domain utilization in Crk. PMID:25381819
A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks. PMID:25362484
The development and application of a quantitative peptide microarray based approach to protein interaction domain specificity space. PMID:25135669
Probing SH2-domains using Inhibitor Affinity Purification (IAP). PMID:25067910
Molecular modulation of the copper and cisplatin transport function of CTR1 and its interaction with IRS-4. PMID:24967972
The genesis of tyrosine phosphorylation. PMID:24789824
Enhanced prediction of Src homology 2 (SH2) domain binding potentials using a fluorescence polarization-derived c-Met, c-Kit, ErbB, and androgen receptor interactome. PMID:24728074
Completion of proteomic data sets by Kd measurement using cell-free synthesis of site-specifically labeled proteins. PMID:24340019
Drosophila SOCS36E negatively regulates JAK/STAT pathway signaling via two separable mechanisms. PMID:23885117
Tyrosine phosphorylation of the orphan receptor ESDN/DCBLD2 serves as a scaffold for the signaling adaptor CrkL. PMID:23770091 -
The protein interaction network mediated by human SH3 domains
PubMed citations: 20.
20 articles citing: The protein interaction network mediated by human SH3 domains
Structure, Activity and Function of the PRMT2 Protein Arginine Methyltransferase. PMID:34833139
Large-scale survey and database of high affinity ligands for peptide recognition modules. PMID:33438817
Splicing-accessible coding 3'UTRs control protein stability and interaction networks. PMID:32727563
Genome-wide identification of methylated CpG sites in nongenital cutaneous warts. PMID:32641122
New analysis pipeline for high-throughput domain-peptide affinity experiments improves SH2 interaction data. PMID:32540967
Molecular characterization, tissue distribution, and functional analysis of the STAC3 gene in chicken. PMID:32206505
Machine-learning techniques for the prediction of protein-protein interactions. PMID:31502581
Identification of two distinct peptide-binding pockets in the SH3 domain of human mixed-lineage kinase 3. PMID:29980598
Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases. PMID:28159843
Large-Scale Screening of Preferred Interactions of Human Src Homology-3 (SH3) Domains Using Native Target Proteins as Affinity Ligands. PMID:27440912
The development and application of a quantitative peptide microarray based approach to protein interaction domain specificity space. PMID:25135669
MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions. PMID:24872426
Combining affinity proteomics and network context to identify new phosphatase substrates and adapters in growth pathways. PMID:24847354
Crk adaptors negatively regulate actin polymerization in pedestals formed by enteropathogenic Escherichia coli (EPEC) by binding to Tir effector. PMID:24675776
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. PMID:24234451
A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains. PMID:23813002
Charting the landscape of tandem BRCT domain-mediated protein interactions. PMID:22990118
Expression and purification of the membrane enzyme selenoprotein K. PMID:22963794
The application of modular protein domains in proteomics. PMID:22710164
High-throughput analysis of peptide-binding modules. PMID:22610655
Tags:
protein interaction proteomics
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