Ontology for Systems Chemical Biology and Chemogenomics
Names
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Ontology for Systems Chemical Biology and Chemogenomics
metasource: Fairsharing.org
version: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Chem2Bio2RDF
metasource: Fairsharing.org
version: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Systems Chemical Biology and Chemogenomics Ontology
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
CHEMBIO
metasource: Biontology / Bioportal
version: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
Names
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Ontology for Systems Chemical Biology and Chemogenomics
metasource: Fairsharing.orgversion: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Chem2Bio2RDF
metasource: Fairsharing.orgversion: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Systems Chemical Biology and Chemogenomics Ontology
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
CHEMBIO
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
Other names: Chem2Bio2RDF, Systems Chemical Biology and Chemogenomics Ontology, CHEMBIO
Names
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Ontology for Systems Chemical Biology and Chemogenomics
metasource: Fairsharing.orgversion: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Chem2Bio2RDF
metasource: Fairsharing.orgversion: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Systems Chemical Biology and Chemogenomics Ontology
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
CHEMBIO
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
Chem2Bio2RDF has been created by aggregating data from multiple chemogenomics repositories and is cross-linked into Bio2RDF and LODD. There is also a linked-path generation tool to facilitate SPARQL query generation, and have created extended SPARQL functions to address specific chemical/biological search needs. Chem2Bio2RDF can be used to investigate polypharmacology, identification of potential multiple pathway inhibitors, and the association of pathways with adverse drug reactions.
Description
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Chem2Bio2RDF has been created by aggregating data from multiple chemogenomics repositories and is cross-linked into Bio2RDF and LODD. There is also a linked-path generation tool to facilitate SPARQL query generation, and have created extended SPARQL functions to address specific chemical/biological search needs. Chem2Bio2RDF can be used to investigate polypharmacology, identification of potential multiple pathway inhibitors, and the association of pathways with adverse drug reactions.
metasource: Fairsharing.orgversion: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Ontology for Systems Chemical Biology and Chemogenomics
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
Webpage:
http://cheminfov.informatics.indiana.edu:8080/c2b2r/Webpage
More detailed information about this field from each metasource.
http://cheminfov.informatics.indiana.edu:8080/c2b2r/
metasource: Fairsharing.orgversion: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://chem2bio2rdf.org/owl
metasource: Biontology / Bioportalversion: 1.1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CHEMBIO
Publications:
Publications
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Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data
PMID: 20478034
metasource: Fairsharing.org
version: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data
PMID: 20478034
metasource: Fairsharing.org
version: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data
PubMed citations: 70.
70 articles citing: Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data
Knowledge graph analytics platform with LINCS and IDG for Parkinson's disease target illumination. PMID:35021991
Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. PMID:34039343
IDSM ChemWebRDF: SPARQLing small-molecule datasets. PMID:33980298
A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions. PMID:33431024
Understanding Drug Repurposing From the Perspective of Biomedical Entities and Their Evolution: Bibliographic Research Using Aspirin. PMID:32543442
Opening up connectivity between documents, structures and bioactivity. PMID:32280387
Exploring the new horizons of drug repurposing: A vital tool for turning hard work into smart work. PMID:31421629
edge2vec: Representation learning using edge semantics for biomedical knowledge discovery. PMID:31238875
Predicting biomedical relationships using the knowledge and graph embedding cascade model. PMID:31194807
Auto-Generated Physiological Chain Data for an Ontological Framework for Pharmacology and Mechanism of Action to Determine Suspected Drugs in Cases of Dysuria. PMID:31119651
Advancing Computational Toxicology in the Big Data Era by Artificial Intelligence: Data-Driven and Mechanism-Driven Modeling for Chemical Toxicity. PMID:30907586
Digital sustainability: basic conditions for sustainable digital artifacts and their ecosystems. PMID:30174752
Review of Drug Repositioning Approaches and Resources. PMID:30123072
DataMed - an open source discovery index for finding biomedical datasets. PMID:29346583
BioSearch: a semantic search engine for Bio2RDF. PMID:29220451
Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches. PMID:29186305
Computational approaches to chemical hazard assessment. PMID:29101769
Predicate Oriented Pattern Analysis for Biomedical Knowledge Discovery. PMID:28983419
VB-MK-LMF: fusion of drugs, targets and interactions using variational Bayesian multiple kernel logistic matrix factorization. PMID:28978313
PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets. PMID:28931422
Adverse drug reactions triggered by the common HLA-B*57:01 variant: a molecular docking study. PMID:28303164
GT2RDF: Semantic Representation of Genetic Testing Data. PMID:28269903
Knowledge Discovery from Biomedical Ontologies in Cross Domains. PMID:27548262
NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease. PMID:27392431
Advanced SPARQL querying in small molecule databases. PMID:27275187
Predicting drug target interactions using meta-path-based semantic network analysis. PMID:27071755
libChEBI: an API for accessing the ChEBI database. PMID:26933452
Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. PMID:26851224
Dealing with the Data Deluge: Handling the Multitude Of Chemical Biology Data Sources. PMID:26609498
Drug Normalization for Cancer Therapeutic and Druggable Genome Target Discovery. PMID:26306243
Optimizing drug-target interaction prediction based on random walk on heterogeneous networks. PMID:26300984
FROG - Fingerprinting Genomic Variation Ontology. PMID:26244889
PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. PMID:26175801
An Ebola virus-centered knowledge base. PMID:26055098
The application of the open pharmacological concepts triple store (open PHACTS) to support drug discovery research. PMID:25522365
Big data in chemical toxicity research: the use of high-throughput screening assays to identify potential toxicants. PMID:25195622
Towards structural systems pharmacology to study complex diseases and personalized medicine. PMID:24830652
Cheminformatics and the Semantic Web: adding value with linked data and enhanced provenance. PMID:24432050
LabTrove: a lightweight, web based, laboratory "blog" as a route towards a marked up record of work in a bioscience research laboratory. PMID:23935832
Plurigon: three dimensional visualization and classification of high-dimensionality data. PMID:23885241
Ontology-Based Querying with Bio2RDF's Linked Open Data. PMID:23735196
The ChEMBL database as linked open data. PMID:23657106
PharmaTrek: A Semantic Web Explorer for Open Innovation in Multitarget Drug Discovery. PMID:23548981
Network pharmacology strategies toward multi-target anticancer therapies: from computational models to experimental design principles. PMID:23530504
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review. PMID:23384594
Taking Open Innovation to the Molecular Level - Strengths and Limitations. PMID:23226167
Assessing drug target association using semantic linked data. PMID:22859915
Mining the pharmacogenomics literature--a survey of the state of the art. PMID:22833496
Using semantic web technologies for cohort identification from electronic health records for clinical research. PMID:22779040
Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. PMID:22642960
Improving integrative searching of systems chemical biology data using semantic annotation. PMID:22401035
A semantic web framework to integrate cancer omics data with biological knowledge. PMID:22373303
From laptop to benchtop to bedside: structure-based drug design on protein targets. PMID:22316152
Associating Drugs, Targets and Clinical Outcomes into an Integrated Network Affords a New Platform for Computer-Aided Drug Repurposing. PMID:22287994
Toward interoperable bioscience data. PMID:22281772
Of possible cheminformatics futures. PMID:22207193
Mining relational paths in integrated biomedical data. PMID:22162991
Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on. PMID:21999342
The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web. PMID:21991315
Empowering industrial research with shared biomedical vocabularies. PMID:21963522
Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics. PMID:21791100
Semantic inference using chemogenomics data for drug discovery. PMID:21699718
Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration. PMID:21595881
Linked open drug data for pharmaceutical research and development. PMID:21575203
Semantic Web integration of Cheminformatics resources with the SADI framework. PMID:21575200
Resource description framework technologies in chemistry. PMID:21569523
Finding complex biological relationships in recent PubMed articles using Bio-LDA. PMID:21448266
Structure-based systems biology for analyzing off-target binding. PMID:21292475
The Comparative Toxicogenomics Database: update 2011. PMID:20864448
WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications. PMID:20727184
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drug
metasource: Fairsharing.org
version: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
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drug
metasource: Fairsharing.orgversion: FAIRsharing.org: Chem2Bio2RDF; Ontology for Systems Chemical Biology and Chemogenomics; DOI: https://doi.org/10.25504/FAIRsharing.rf4pmz; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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