MetabolomicsTools
Other names: metabolomicstools
Freely-available software tools for metabolomics analysis.
Description
More detailed information about this field from each metasource.
Freely-available software tools for metabolomics analysis.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:07.610363
Webpage:
https://github.com/RASpicer/MetabolomicsToolsWebpage
More detailed information about this field from each metasource.
https://github.com/RASpicer/MetabolomicsTools
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:07.610363
Publications:
Publications
More detailed information about this field from each metasource.
Navigating freely-available software tools for metabolomics analysis
PMID: 28890673
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:07.610363
Publications
More detailed information about this field from each metasource.
Navigating freely-available software tools for metabolomics analysis
PMID: 28890673
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:07.610363
-
Navigating freely-available software tools for metabolomics analysis
PubMed citations: 69.
69 articles citing: Navigating freely-available software tools for metabolomics analysis
Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation. PMID:35350714
Comparison of Two Automated Targeted Metabolomics Programs to Manual Profiling by an Experienced Spectroscopist for 1H-NMR Spectra. PMID:35323670
Autophagy Improves ARA-Rich TAG Accumulation in Mortierella alpina by Regulating Resource Allocation. PMID:35138146
Hyphenated Mass Spectrometry versus Real-Time Mass Spectrometry Techniques for the Detection of Volatile Compounds from the Human Body. PMID:34885767
MSCAT: A Machine Learning Assisted Catalog of Metabolomics Software Tools. PMID:34677393
Liquid Chromatography-Mass Spectrometry for Clinical Metabolomics: An Overview. PMID:34628633
Mass Spectrometry-Based Zebrafish Toxicometabolomics: A Review of Analytical and Data Quality Challenges. PMID:34564451
Metabolomics-Based Screening of Inborn Errors of Metabolism: Enhancing Clinical Application with a Robust Computational Pipeline. PMID:34564390
Reproducibility of mass spectrometry based metabolomics data. PMID:34493210
Prospects and challenges of cancer systems medicine: from genes to disease networks. PMID:34471925
Metabolomic and Lipidomic Approaches to Evaluate the Effects of Eucommia ulmoides Leaves on Milk Quality and Biochemical Properties. PMID:34141731
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights. PMID:34019663
Metabolomics in cancer research and emerging applications in clinical oncology. PMID:33982817
New software tools, databases, and resources in metabolomics: updates from 2020. PMID:33977389
Multi-Staged Data-Integrated Multi-Omics Analysis for Symptom Science Research. PMID:33827270
gcProfileMakeR: An R Package for Automatic Classification of Constitutive and Non-Constitutive Metabolites. PMID:33807334
Viime: Visualization and Integration of Metabolomics Experiments. PMID:33768193
A LCMS Metabolomic Workflow to Investigate Metabolic Patterns in Human Intestinal Cells Exposed to Hydrolyzed Crab Waste Materials. PMID:33681165
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. PMID:33591968
Lilikoi V2.0: a deep learning-enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data. PMID:33484242
Cognitive analysis of metabolomics data for systems biology. PMID:33483720
A Practical Guide to Metabolomics Software Development. PMID:33467846
Creation and filtering of a recurrent spectral library of CHO cell metabolites and media components. PMID:33404064
SUMMER, a shiny utility for metabolomics and multiomics exploratory research. PMID:33294943
Adduct annotation in liquid chromatography/high-resolution mass spectrometry to enhance compound identification. PMID:33123762
Automated supervised learning pipeline for non-targeted GC-MS data analysis. PMID:33117972
Automating and Extending Comprehensive Two-Dimensional Gas Chromatography Data Processing by Interfacing Open-Source and Commercial Software. PMID:32985172
Comparison of Three Untargeted Data Processing Workflows for Evaluating LC-HRMS Metabolomics Data. PMID:32967365
Food Phenotyping: Recording and Processing of Non-Targeted Liquid Chromatography Mass Spectrometry Data for Verifying Food Authenticity. PMID:32878155
Mass Spectrometry-Based Non-targeted Metabolic Profiling for Disease Detection: Recent Developments. PMID:32831436
Addressing the batch effect issue for LC/MS metabolomics data in data preprocessing. PMID:32807888
Metabolite AutoPlotter - an application to process and visualise metabolite data in the web browser. PMID:32670572
Time-resolved multi-omics analysis reveals the role of nutrient stress-induced resource reallocation for TAG accumulation in oleaginous fungus Mortierella alpina. PMID:32625246
Chemical Discovery in the Era of Metabolomics. PMID:32275430
Software tools, databases and resources in metabolomics: updates from 2018 to 2019. PMID:32146531
A Case Report of Switching from Specific Vendor-Based to R-Based Pipelines for Untargeted LC-MS Metabolomics. PMID:31936230
Optimization of XCMS parameters for LC-MS metabolomics: an assessment of automated versus manual tuning and its effect on the final results. PMID:31925557
Evaluation of freely available software tools for untargeted quantification of 13C isotopic enrichment in cellular metabolome from HR-LC/MS data. PMID:31908925
Metabolomics: A Way Forward for Crop Improvement. PMID:31847393
Metabolite database for root, tuber, and banana crops to facilitate modern breeding in understudied crops. PMID:31845400
A Bioinformatics Guide to Plant Microbiome Analysis. PMID:31708944
The metaRbolomics Toolbox in Bioconductor and beyond. PMID:31548506
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop. PMID:31440979
Towards Mass Spectrometry-Based Chemical Exposome: Current Approaches, Challenges, and Future Directions. PMID:31426576
Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS). PMID:31319517
Visual mass-spec share (vMS-Share): a new public web-based mass spectrometry visualization and data mining repository. PMID:31274965
The Search for Clinically Useful Biomarkers of Complex Disease: A Data Analysis Perspective. PMID:31269649
Filtering procedures for untargeted LC-MS metabolomics data. PMID:31200644
GC-MS method for metabolic profiling of mouse femoral head articular cartilage reveals distinct effects of tissue culture and development. PMID:31136803
Nutritional Metabolomics in Cancer Epidemiology: Current Trends, Challenges, and Future Directions. PMID:31129888
BLANKA: an Algorithm for Blank Subtraction in Mass Spectrometry of Complex Biological Samples. PMID:30993641
Evaluation of metabolome sample preparation and extraction methodologies for oleaginous filamentous fungi Mortierella alpina. PMID:30900034
Metabolomic Insights into Human Arboviral Infections: Dengue, Chikungunya, and Zika Viruses. PMID:30845653
Similarity and differential NMR spectroscopy in metabolomics: application to the analysis of vegetable oils with 1H and 13C NMR. PMID:30843128
GC-MS metabolic profiling reveals fructose-2,6-bisphosphate regulates branched chain amino acid metabolism in the heart during fasting. PMID:30830475
Review of recent developments in GC-MS approaches to metabolomics-based research. PMID:30830421
NormalizeMets: assessing, selecting and implementing statistical methods for normalizing metabolomics data. PMID:30830328
rDolphin: a GUI R package for proficient automatic profiling of 1D 1H-NMR spectra of study datasets. PMID:30830320
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. PMID:30688441
Autonomous METLIN-Guided In-source Fragment Annotation for Untargeted Metabolomics. PMID:30681830
The Omics Revolution Continues: The Maturation of High-Throughput Biological Data Sources. PMID:30157526
Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. PMID:29748461
Current Challenges in Plant Eco-Metabolomics. PMID:29734799
Cardiovascular Metabolomics. PMID:29700070
Metabolic phenotyping of malnutrition during the first 1000 days of life. PMID:29644395
From correlation to causation: analysis of metabolomics data using systems biology approaches. PMID:29503602
Current trends for customized biomedical software tools. PMID:29379257
Integrated analytical assets aid botanical authenticity and adulteration management. PMID:29175549
Annotation: A Computational Solution for Streamlining Metabolomics Analysis. PMID:29039932
Tags:
metabolomics endocrinology and metabolism
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