Other names: bmss2
BMSS2 is a unified database-driven modelling package for systematic model selection and identifiability analysis.
systems biology synthetic biology workflows
PlaSMo stands for Plant Systems-biology Modelling and the mission of the project was ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tom ...
Freely-available software tools for metabolomics analysis.
Data Package is a simple container format used to describe and package a collection of data. The format provides a simple contract for data interoperability that supports frictionless delivery, instal ...
The Synthetic Biology Open Language (SBOL) is a standard used for the in silico representation of genetic designs. SBOL is designed to allow synthetic biologists and genetic engineers to electronicall ...
A lims system to automate and expedite proteomics data management, processing and analysis.
The Epigenome Ontology (EGO) a biomedical ontology for integrative epigenome knowledge representation and data analysis.
KBase is the first large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share a ...
ASAP is a relational database and web interface developed to store, update and distribute genome sequence data and gene expression data. It was designed to facilitate ongoing community annotation of g ...
This project provides open-source software that is developed in Laboratory of Systems Biology at Institute of Cybernetics. The project is created to publish the software, this includes distributing th ...
Systems Biology Results markup language (SBRML) specifies models composed of molecular species, and their interactions (including reactions). The markup language is intended to specify results from op ...
The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modelling. It consists of seven orthogonal vo ...
PRISMA is an evidence-based minimum set of items for reporting in systematic reviews and meta-analyses.The aim of the PRISMA Statement is to help authors improve the reporting of systematic reviews an ...
Community analysis of E. coli and related genomes
The Systems Biology Markup Language (SBML) is a machine-readable exchange format for computational models of biological processes. Its strength is in representating phenomena at the scale of biochemic ...
The Systems Biology Graphical Notation (SBGN) project is an effort to standardize the graphical notation used in maps of biological processes. The mission of SBGN project is to develop high quality, s ...
PPNID: a manually curated reference database and identification tool for plant-parasitic nematode.
ChemHub is a comprehensive database for selecting biosynthetic target molecules based on compound functions.
The iGEM Parts Registry is a growing collection of genetic parts that can be mixed and matched to build synthetic biology devices and systems. As part of the synthetic biology community's efforts to m ...
The FAIRDOMHub is a publicly available resource build using the SEEK software, which enables collaborations within the scientific community. FAIRDOM will establish a support and service network for Eu ...
Functional annotation of the first artificial organism Mycoplasma mycoides JCVI-syn3A.