MarRef

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MarRef

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861

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marref

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861

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Other names: marref

MarRef is a manually curated marine microbial genome database that contains complete genomes.

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Publications:

Publications

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The MAR databases: development and implementation of databases specific for marine metagenomics
PMID: 29106641

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861

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• The MAR databases: development and implementation of databases specific for marine metagenomics PubMed citations: 23.

  23 articles citing: The MAR databases: development and implementation of databases specific for marine metagenomics

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  Ecosystem-specific microbiota and microbiome databases in the era of big data. PMID:35842686

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  Biosynthetic potential of the global ocean microbiome. PMID:35732736

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  The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments. PMID:35715423

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  The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. PMID:35687095

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  Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. PMID:35484634

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  Critical Assessment of Metagenome Interpretation: the second round of challenges. PMID:35396482

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  Microbial Community Dynamics during Biodegradation of Crude Oil and Its Response to Biostimulation in Svalbard Seawater at Low Temperature. PMID:34946026

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  Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase. PMID:33995922

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  The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes. PMID:33970781

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  Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria. PMID:32974097

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  Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data. PMID:32735679

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  Terabase-scale metagenome coassembly with MetaHipMer. PMID:32612216

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  Genomic Blueprint of Glycine Betaine Metabolism in Coral Metaorganisms and Their Contribution to Reef Nitrogen Budgets. PMID:32438323

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  Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology. PMID:31841132

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  Charting the Complexity of the Marine Microbiome through Single-Cell Genomics. PMID:31835036

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  Antibiotic Resistome Biomarkers associated to the Pelagic Sediments of the Gulfs of Kathiawar Peninsula and Arabian Sea. PMID:31754151

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  Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. PMID:31730850

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  Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509

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  Mining biosynthetic gene clusters in Virgibacillus genomes. PMID:31481022

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  Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua). PMID:30995938

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  Co-culture and biogeography of Prochlorococcus and SAR11. PMID:30742057

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  Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate. PMID:30643200

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  Genomes OnLine database (GOLD) v.7: updates and new features. PMID:30357420

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Tags

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marine biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861

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microbiology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861

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genomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861

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data mining

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861

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marine biology microbiology genomics data mining