MarCat
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MarCat is a gene (protein) catalogue of uncultivable and cultivable marine microorganisms derived from metagenomics samples.
Description
More detailed information about this field from each metasource.
MarCat is a gene (protein) catalogue of uncultivable and cultivable marine microorganisms derived from metagenomics samples.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
Webpage:
https://mmp.sfb.uit.no/databases/Webpage
More detailed information about this field from each metasource.
https://mmp.sfb.uit.no/databases/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
Licence:
Name: CC-BY-NC-ND-3.0Licence name
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Publications:
Publications
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The MAR databases: development and implementation of databases specific for marine metagenomics
PMID: 29106641
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
Publications
More detailed information about this field from each metasource.
The MAR databases: development and implementation of databases specific for marine metagenomics
PMID: 29106641
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
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The MAR databases: development and implementation of databases specific for marine metagenomics
PubMed citations: 23.
23 articles citing: The MAR databases: development and implementation of databases specific for marine metagenomics
Ecosystem-specific microbiota and microbiome databases in the era of big data. PMID:35842686
Biosynthetic potential of the global ocean microbiome. PMID:35732736
The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments. PMID:35715423
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. PMID:35687095
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. PMID:35484634
Critical Assessment of Metagenome Interpretation: the second round of challenges. PMID:35396482
Microbial Community Dynamics during Biodegradation of Crude Oil and Its Response to Biostimulation in Svalbard Seawater at Low Temperature. PMID:34946026
Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase. PMID:33995922
The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes. PMID:33970781
Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria. PMID:32974097
Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data. PMID:32735679
Terabase-scale metagenome coassembly with MetaHipMer. PMID:32612216
Genomic Blueprint of Glycine Betaine Metabolism in Coral Metaorganisms and Their Contribution to Reef Nitrogen Budgets. PMID:32438323
Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology. PMID:31841132
Charting the Complexity of the Marine Microbiome through Single-Cell Genomics. PMID:31835036
Antibiotic Resistome Biomarkers associated to the Pelagic Sediments of the Gulfs of Kathiawar Peninsula and Arabian Sea. PMID:31754151
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. PMID:31730850
Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509
Mining biosynthetic gene clusters in Virgibacillus genomes. PMID:31481022
Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua). PMID:30995938
Co-culture and biogeography of Prochlorococcus and SAR11. PMID:30742057
Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate. PMID:30643200
Genomes OnLine database (GOLD) v.7: updates and new features. PMID:30357420
Tags:
Tags
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marine biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
microbiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
data mining
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:00.047861
Tags
More detailed information about this field from each metasource.
marine biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
microbiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
metagenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
data mining
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:00.047861
marine biology microbiology metagenomics data mining
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