HIV-1 Human Interaction Database
The HIV-1, human protein interaction data presented here are based on literature reports. This dataset is available in report pages per HIV-1 protein and is also integrated into Entrez Gene report pages for HIV-1 and human proteins.
Description
More detailed information about this field from each metasource.
The HIV-1, human protein interaction data presented here are based on literature reports. This dataset is available in report pages per HIV-1 protein and is also integrated into Entrez Gene report pages for HIV-1 and human proteins.
metasource: Fairsharing.orgversion: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Webpage:
https://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/interactions/Webpage
More detailed information about this field from each metasource.
https://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/interactions/
metasource: Fairsharing.orgversion: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Licence:
Name: HIV-1 Human Interaction Database Attribution requiredLicence name
More detailed information about this field from each metasource.
HIV-1 Human Interaction Database Attribution required
metasource: Fairsharing.orgversion: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Licence URL
More detailed information about this field from each metasource.
https://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/interactions/about/
metasource: Fairsharing.orgversion: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Human immunodeficiency virus type 1, human protein interaction database at NCBI
PMID: 18927109
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Cataloguing the HIV type 1 human protein interaction network
PMID: 19025396
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
HIV-1, human interaction database: current status and new features
PMID: 25378338
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
Human immunodeficiency virus type 1, human protein interaction database at NCBI
PMID: 18927109
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Cataloguing the HIV type 1 human protein interaction network
PMID: 19025396
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
HIV-1, human interaction database: current status and new features
PMID: 25378338
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
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Human immunodeficiency virus type 1, human protein interaction database at NCBI
PubMed citations: 129.
129 articles citing: Human immunodeficiency virus type 1, human protein interaction database at NCBI
Circular RNA Profiles in Viremia and ART Suppression Predict Competing circRNA-miRNA-mRNA Networks Exclusive to HIV-1 Viremic Patients. PMID:35458413
Comparative Analysis of T-Cell Spatial Proteomics and the Influence of HIV Expression. PMID:35017099
The large extracellular loop of CD63 interacts with gp41 of HIV-1 and is essential for establishing the virological synapse. PMID:33976357
A systems-based method to repurpose marketed therapeutics for antiviral use: a SARS-CoV-2 case study. PMID:33593923
HIV-1 Infection Transcriptomics: Meta-Analysis of CD4+ T Cells Gene Expression Profiles. PMID:33557210
Reanalysis of Gene Expression Profiles of CD4+ T Cells Treated with HIV-1 Latency Reversal Agents. PMID:33007800
The Impact of COVID-19 on the Insurance Industry. PMID:32784978
Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection. PMID:32751854
A High-Throughput HIV-1 Drug Screening Platform, Based on Lentiviral Vectors and Compatible with Biosafety Level-1. PMID:32466195
Evidence for Persistent Monocyte and Immune Dysregulation After Prolonged Viral Suppression Despite Normalization of Monocyte Subsets, sCD14 and sCD163 in HIV-Infected Individuals. PMID:31893252
Transcriptome Sequencing of Peripheral Blood Mononuclear Cells from Elite Controller-Long Term Non Progressors. PMID:31582776
Host-HIV-1 Interactome: A Quest for Novel Therapeutic Intervention. PMID:31569640
Anti-Tat Immunity in HIV-1 Infection: Effects of Naturally Occurring and Vaccine-Induced Antibodies Against Tat on the Course of the Disease. PMID:31454973
Analysis of networks of host proteins in the early time points following HIV transduction. PMID:31315557
Augmenting subnetwork inference with information extracted from the scientific literature. PMID:31246951
Convergent perturbation of the human domain-resolved interactome by viruses and mutations inducing similar disease phenotypes. PMID:30759076
Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery. PMID:30082644
Systematic detection of positive selection in the human-pathogen interactome and lasting effects on infectious disease susceptibility. PMID:29799843
Elucidating the in vivo interactome of HIV-1 RNA by hybridization capture and mass spectrometry. PMID:29208937
Iron overload down-regulates the expression of the HIV-1 Rev cofactor eIF5A in infected T lymphocytes. PMID:28785172
The Influence of HIV on the Evolution of Mycobacterium tuberculosis. PMID:28369607
Preservation affinity in consensus modules among stages of HIV-1 progression. PMID:28320358
SILAC Based Proteomic Characterization of Exosomes from HIV-1 Infected Cells. PMID:28287540
Prediction of virus-host protein-protein interactions mediated by short linear motifs. PMID:28279163
The transcriptome of HIV-1 infected intestinal CD4+ T cells exposed to enteric bacteria. PMID:28241075
Annexin A2 antibodies but not inhibitors of the annexin A2 heterotetramer impair productive HIV-1 infection of macrophages in vitro. PMID:27863502
Stem-loop binding protein is a multifaceted cellular regulator of HIV-1 replication. PMID:27454292
A NMF based approach for integrating multiple data sources to predict HIV-1-human PPIs. PMID:26956556
Uncovering New Pathogen-Host Protein-Protein Interactions by Pairwise Structure Similarity. PMID:26799490
Proteomic Characterization of Exosomes from HIV-1-Infected Cells. PMID:26714721
Database resources of the National Center for Biotechnology Information. PMID:26615191
Recent strategies and progress in identifying host factors involved in virus replication. PMID:26112615
An Ebola virus-centered knowledge base. PMID:26055098
An integrative approach for a network based meta-analysis of viral RNAi screens. PMID:25691914
Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets. PMID:25627479
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
NCBI viral genomes resource. PMID:25428358
Database resources of the National Center for Biotechnology Information. PMID:25398906
HIV-1, human interaction database: current status and new features. PMID:25378338
AdaBoost based multi-instance transfer learning for predicting proteome-wide interactions between Salmonella and human proteins. PMID:25330226
ViRBase: a resource for virus-host ncRNA-associated interactions. PMID:25274736
Alterations in the nuclear proteome of HIV-1 infected T-cells. PMID:25240327
An integrated ontology resource to explore and study host-virus relationships. PMID:25233094
Computational reconstruction of proteome-wide protein interaction networks between HTLV retroviruses and Homo sapiens. PMID:25037487
The domain landscape of virus-host interactomes. PMID:24991570
Deep sequencing of HIV-infected cells: insights into nascent transcription and host-directed therapy. PMID:24850744
Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. PMID:24708540
Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. PMID:24564941
Quantitative proteomics by SWATH-MS reveals altered expression of nucleic acid binding and regulatory proteins in HIV-1-infected macrophages. PMID:24564501
Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach. PMID:24460683
Transcriptome analysis of primary monocytes from HIV-positive patients with differential responses to antiretroviral therapy. PMID:24370116
Probability weighted ensemble transfer learning for predicting interactions between HIV-1 and human proteins. PMID:24260261
Database resources of the National Center for Biotechnology Information. PMID:24259429
Proteomic landscape of bronchoalveolar lavage fluid in human immunodeficiency virus infection. PMID:24213920
High-throughput RNA interference screens integrative analysis: Towards a comprehensive understanding of the virus-host interplay. PMID:24175227
Computational analysis of virus-host interactomes. PMID:23996253
A viral-human interactome based on structural motif-domain interactions captures the human infectome. PMID:23951184
A systematic analysis of host factors reveals a Med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication. PMID:23950709
Histone deacetylases in herpesvirus replication and virus-stimulated host defense. PMID:23807710
Identifying chemicals with potential therapy of HIV based on protein-protein and protein-chemical interaction network. PMID:23762317
Cataloging the biomedical world of pain through semi-automated curation of molecular interactions. PMID:23707966
Quantitative phosphoproteomics reveals extensive cellular reprogramming during HIV-1 entry. PMID:23684312
The conserved set of host proteins incorporated into HIV-1 virions suggests a common egress pathway in multiple cell types. PMID:23432411
Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito. PMID:23326450
Toward a three-dimensional view of protein networks between species. PMID:23267356
Generation of a genome scale lentiviral vector library for EF1α promoter-driven expression of human ORFs and identification of human genes affecting viral titer. PMID:23251614
Evidence for selection at HIV host susceptibility genes in a West Central African human population. PMID:23217182
Database resources of the National Center for Biotechnology Information. PMID:23193264
Nucleolar protein trafficking in response to HIV-1 Tat: rewiring the nucleolus. PMID:23166591
Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions. PMID:23157382
Linking the signaling cascades and dynamic regulatory networks controlling stress responses. PMID:23064748
A network-based approach for predicting missing pathway interactions. PMID:22916002
HIV-1 infection and first line ART induced differential responses in mitochondria from blood lymphocytes and monocytes: the ANRS EP45 "Aging" study. PMID:22829920
Quantitative proteomic analysis of exosomes from HIV-1-infected lymphocytic cells. PMID:22807456
Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space. PMID:22750305
Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: protein synthesis, cell proliferation, and T-cell activation. PMID:22542004
A novel biclustering approach to association rule mining for predicting HIV-1-human protein interactions. PMID:22539940
Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database. PMID:22529179
Host genes important to HIV replication and evolution. PMID:22474614
Rodent models for HIV-associated neurocognitive disorders. PMID:22305769
Origins of HIV and the AIDS pandemic. PMID:22229120
Determining confidence of predicted interactions between HIV-1 and human proteins using conformal method. PMID:22174286
Database resources of the National Center for Biotechnology Information. PMID:22140104
Detection of RNA editing events in human cells using high-throughput sequencing. PMID:22130986
Proteomic signatures of human oral epithelial cells in HIV-infected subjects. PMID:22114700
Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension. PMID:22066947
Systems-biology approaches to discover anti-viral effectors of the human innate immune response. PMID:21994773
Dominating biological networks. PMID:21887225
HIV protein sequence hotspots for crosstalk with host hub proteins. PMID:21858059
GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data. PMID:21777475
Systematic approaches towards the development of host-directed antiviral therapeutics. PMID:21747723
Sequence- and interactome-based prediction of viral protein hotspots targeting host proteins: a case study for HIV Nef. PMID:21738584
HIVToolbox, an integrated web application for investigating HIV. PMID:21647445
Shared molecular strategies of the malaria parasite P. falciparum and the human virus HIV-1. PMID:21586753
Genome-wide association study implicates PARD3B-based AIDS restriction. PMID:21502085
Supervised learning and prediction of physical interactions between human and HIV proteins. PMID:21382517
Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages. PMID:21364930
Mapping protein interactions between Dengue virus and its human and insect hosts. PMID:21358811
Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception. PMID:21342548
Virus interactions with human signal transduction pathways. PMID:21330695
Functional comparison of innate immune signaling pathways in primates. PMID:21187902
Discovering pathways by orienting edges in protein interaction networks. PMID:21109539
Database resources of the National Center for Biotechnology Information. PMID:21097890
Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. PMID:21083371
Host genetics and HIV-1: the final phase? PMID:20976252
Inference of surface membrane factors of HIV-1 infection through functional interaction networks. PMID:20967291
HIV-1 host interactions: integration of large-scale datasets. PMID:20948616
Gene expression variability within and between human populations and implications toward disease susceptibility. PMID:20865155
A perspective of the dynamic structure of the nucleus explored at the single-molecule level. PMID:20842420
Viral organization of human proteins. PMID:20827298
Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins. PMID:20823334
Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems. PMID:20686668
Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks. PMID:20633292
Modular composition predicts kinase/substrate interactions. PMID:20579376
Positive selection of HIV host factors and the evolution of lentivirus genes. PMID:20565842
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack. PMID:20529270
Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens. PMID:20426868
Novel HIV-1 knockdown targets identified by an enriched kinases/phosphatases shRNA library using a long-term iterative screen in Jurkat T-cells. PMID:20174665
Genome-wide identification of susceptibility alleles for viral infections through a population genetics approach. PMID:20174570
Global approaches to study protein-protein interactions among viruses and hosts. PMID:20143950
Alternative paths in HIV-1 targeted human signal transduction pathways. PMID:19958495
Database resources of the National Center for Biotechnology Information. PMID:19910364
CAPIH: a Web interface for comparative analyses and visualization of host-HIV protein-protein interactions. PMID:19674441
Host sequence motifs shared by HIV predict response to antiretroviral therapy. PMID:19627600
Dynamic host energetics and cytoskeletal proteomes in human immunodeficiency virus type 1-infected human primary CD4 cells: analysis by multiplexed label-free mass spectrometry. PMID:19587052
Host cell factors in HIV replication: meta-analysis of genome-wide studies. PMID:19478882
In vitro nuclear interactome of the HIV-1 Tat protein. PMID:19454010
Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs. PMID:19450270
JNets: exploring networks by integrating annotation. PMID:19323810 -
Cataloguing the HIV type 1 human protein interaction network
PubMed citations: 61.
61 articles citing: Cataloguing the HIV type 1 human protein interaction network
Circular RNA Profiles in Viremia and ART Suppression Predict Competing circRNA-miRNA-mRNA Networks Exclusive to HIV-1 Viremic Patients. PMID:35458413
A systems-based method to repurpose marketed therapeutics for antiviral use: a SARS-CoV-2 case study. PMID:33593923
HIV-1 Infection Transcriptomics: Meta-Analysis of CD4+ T Cells Gene Expression Profiles. PMID:33557210
Reanalysis of Gene Expression Profiles of CD4+ T Cells Treated with HIV-1 Latency Reversal Agents. PMID:33007800
Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection. PMID:32751854
A High-Throughput HIV-1 Drug Screening Platform, Based on Lentiviral Vectors and Compatible with Biosafety Level-1. PMID:32466195
Host-HIV-1 Interactome: A Quest for Novel Therapeutic Intervention. PMID:31569640
A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery. PMID:31159726
HLA-F*01:01 presents peptides with N-terminal flexibility and a preferred length of 16 residues. PMID:30941482
Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems. PMID:30765882
Convergent perturbation of the human domain-resolved interactome by viruses and mutations inducing similar disease phenotypes. PMID:30759076
Didehydro-Cortistatin A Inhibits HIV-1 by Specifically Binding to the Unstructured Basic Region of Tat. PMID:30723126
Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery. PMID:30082644
Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting. PMID:29757994
Protein-Protein Interactions in Virus-Host Systems. PMID:28861068
Iron overload down-regulates the expression of the HIV-1 Rev cofactor eIF5A in infected T lymphocytes. PMID:28785172
HIV, Tat and dopamine transmission. PMID:28457951
The double-domain cytidine deaminase APOBEC3G is a cellular site-specific RNA editing enzyme. PMID:27974822
DenHunt - A Comprehensive Database of the Intricate Network of Dengue-Human Interactions. PMID:27618709
Recent strategies and progress in identifying host factors involved in virus replication. PMID:26112615
Analysis of HIV-1 Gag protein interactions via biotin ligase tagging. PMID:25631074
HIV-1, human interaction database: current status and new features. PMID:25378338
Discrepant amplification results during the development of an assay leads to reclassification of two AIDS reagent repository HIV-2 isolates as HIV-1. PMID:24797800
Podocyte-specific RAP1GAP expression contributes to focal segmental glomerulosclerosis-associated glomerular injury. PMID:24642466
Quantitative proteomics by SWATH-MS reveals altered expression of nucleic acid binding and regulatory proteins in HIV-1-infected macrophages. PMID:24564501
Peptide-based identification of functional motifs and their binding partners. PMID:23852082
Histone deacetylases in herpesvirus replication and virus-stimulated host defense. PMID:23807710
Identifying chemicals with potential therapy of HIV based on protein-protein and protein-chemical interaction network. PMID:23762317
Immunogenetics: Genome-Wide Association of Non-Progressive HIV and Viral Load Control: HLA Genes and Beyond. PMID:23750159
The foamy virus Gag proteins: what makes them different? PMID:23531622
The conserved set of host proteins incorporated into HIV-1 virions suggests a common egress pathway in multiple cell types. PMID:23432411
Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito. PMID:23326450
Nucleolar protein trafficking in response to HIV-1 Tat: rewiring the nucleolus. PMID:23166591
The Continuing Evolution of HIV-1 Therapy: Identification and Development of Novel Antiretroviral Agents Targeting Viral and Cellular Targets. PMID:22848825
Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space. PMID:22750305
Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: protein synthesis, cell proliferation, and T-cell activation. PMID:22542004
A novel biclustering approach to association rule mining for predicting HIV-1-human protein interactions. PMID:22539940
Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database. PMID:22529179
Host-pathogen interactome mapping for HTLV-1 and -2 retroviruses. PMID:22458338
Proteomic signatures of human oral epithelial cells in HIV-infected subjects. PMID:22114700
Systems-biology approaches to discover anti-viral effectors of the human innate immune response. PMID:21994773
The cellular protein lyric interacts with HIV-1 Gag. PMID:21957284
GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data. PMID:21777475
HIV-1 Tat binds to SH3 domains: cellular and viral outcome of Tat/Grb2 interaction. PMID:21745501
Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception. PMID:21342548
Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. PMID:21083371
A perspective of the dynamic structure of the nucleus explored at the single-molecule level. PMID:20842420
Purification and characterization of HIV-human protein complexes. PMID:20708689
Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems. PMID:20686668
Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks. PMID:20633292
Positive selection of HIV host factors and the evolution of lentivirus genes. PMID:20565842
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack. PMID:20529270
A flow cytometry-based FRET assay to identify and analyse protein-protein interactions in living cells. PMID:20179761
Alternative paths in HIV-1 targeted human signal transduction pathways. PMID:19958495
Identification of a heterogeneous nuclear ribonucleoprotein-recognition region in the HIV Rev protein. PMID:19808671
HLA class I molecules reflect an altered host proteome after influenza virus infection. PMID:19748539
9-Aminoacridine inhibition of HIV-1 Tat dependent transcription. PMID:19630958
Host sequence motifs shared by HIV predict response to antiretroviral therapy. PMID:19627600
Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs. PMID:19450270
JNets: exploring networks by integrating annotation. PMID:19323810
Human immunodeficiency virus type 1, human protein interaction database at NCBI. PMID:18927109 -
HIV-1, human interaction database: current status and new features
PubMed citations: 41.
41 articles citing: HIV-1, human interaction database: current status and new features
PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web. PMID:35776535
The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses. PMID:35531299
In silico prediction of HIV-1-host molecular interactions and their directionality. PMID:35134057
Interactome of human and SARS-CoV-2 proteins to identify human hub proteins associated with comorbidities. PMID:34655901
Interactions of HIV-1 Capsid with Host Factors and Their Implications for Developing Novel Therapeutics. PMID:33807824
Integrated analysis of lncRNA, miRNA and mRNA profiles reveals potential lncRNA functions during early HIV infection. PMID:33794921
SARSCOVIDB-A New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection. PMID:33553941
hsa-miR-191-5p inhibits replication of human immunodeficiency virus type 1 by downregulating the expression of NUP50. PMID:33420627
Machine learning techniques for sequence-based prediction of viral-host interactions between SARS-CoV-2 and human proteins. PMID:33036956
Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection. PMID:32751854
Network-Based Analysis of OMICs Data to Understand the HIV-Host Interaction. PMID:32625189
Controllability analysis of molecular pathways points to proteins that control the entire interaction network. PMID:32076007
Evidence for Persistent Monocyte and Immune Dysregulation After Prolonged Viral Suppression Despite Normalization of Monocyte Subsets, sCD14 and sCD163 in HIV-Infected Individuals. PMID:31893252
Proteomics Profiling of Autologous Blood and Semen Exosomes from HIV-infected and Uninfected Individuals Reveals Compositional and Functional Variabilities. PMID:31676584
Proteomic Profiling of Exosomes Derived from Plasma of HIV-Infected Alcohol Drinkers and Cigarette Smokers. PMID:31065972
Integrated systems approach defines the antiviral pathways conferring protection by the RV144 HIV vaccine. PMID:30787294
Histone deacetylase inhibitors induce complex host responses that contribute to differential potencies of these compounds in HIV reactivation. PMID:30745362
Genetic, Transcriptome, Proteomic, and Epidemiological Evidence for Blood-Brain Barrier Disruption and Polymicrobial Brain Invasion as Determinant Factors in Alzheimer's Disease. PMID:30480234
Post-translational Modification-Based Regulation of HIV Replication. PMID:30254620
Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery. PMID:30082644
Protein-protein interactions of human viruses. PMID:30031213
Detection of HIV-1 and Human Proteins in Urinary Extracellular Vesicles from HIV+ Patients. PMID:29721020
Cellular and molecular mechanisms of HIV-1 integration targeting. PMID:29417178
Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. PMID:29083404
Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr. PMID:28606917
HIVed, a knowledgebase for differentially expressed human genes and proteins during HIV infection, replication and latency. PMID:28358052
miRNA profiling of human naive CD4 T cells links miR-34c-5p to cell activation and HIV replication. PMID:27993935
A Cas9 Ribonucleoprotein Platform for Functional Genetic Studies of HIV-Host Interactions in Primary Human T Cells. PMID:27783955
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay. PMID:27782208
DenHunt - A Comprehensive Database of the Intricate Network of Dengue-Human Interactions. PMID:27618709
HPIDB 2.0: a curated database for host-pathogen interactions. PMID:27374121
HIV Genome-Wide Protein Associations: a Review of 30 Years of Research. PMID:27357278
Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4(+) T cells. PMID:27067385
NF45 and NF90 Bind HIV-1 RNA and Modulate HIV Gene Expression. PMID:26891316
Cyclophilin B enhances HIV-1 infection. PMID:26774171
Prediction of Protein-Protein Interaction Sites with Machine-Learning-Based Data-Cleaning and Post-Filtering Procedures. PMID:26563228
Advancing research in NeuroAIDS using collaboration and public data sharing. PMID:26560870
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. PMID:26553804
Identification of Genes Whose Expression Profile Is Associated with Non-Progression towards AIDS Using eQTLs. PMID:26367535
The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies. PMID:26228431
A review on computational systems biology of pathogen-host interactions. PMID:25914674
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gene
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
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More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: HIV-1 Human Interaction Database; HIV-1 Human Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.sc7fv9; Last edited: April 26, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
gene protein protein interaction
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