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Standard Flowgram Format

Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing. SFF files can be viewed, edited and converted with DNA Baser SFF Workbench (graphic tool), or converted to FASTQ format with sff2fastq or seq_crumbs.

Description

More detailed information about this field from each metasource.

Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing. SFF files can be viewed, edited and converted with DNA Baser SFF Workbench (graphic tool), or converted to FASTQ format with sff2fastq or seq_crumbs.

metasource: Fairsharing.org
version: FAIRsharing.org: Standard Flowgram Format; Standard Flowgram Format; DOI: https://doi.org/10.25504/FAIRsharing.nn7bf2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.

Webpage:

http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff

Webpage

More detailed information about this field from each metasource.

http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff

Tags:

Tags
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deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: Standard Flowgram Format; Standard Flowgram Format; DOI: https://doi.org/10.25504/FAIRsharing.nn7bf2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.

sequence alignment
metasource: Fairsharing.org
version: FAIRsharing.org: Standard Flowgram Format; Standard Flowgram Format; DOI: https://doi.org/10.25504/FAIRsharing.nn7bf2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.

region
metasource: Fairsharing.org
version: FAIRsharing.org: Standard Flowgram Format; Standard Flowgram Format; DOI: https://doi.org/10.25504/FAIRsharing.nn7bf2; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:12 p.m.

dna sequence alignment region

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ICM binary file Format

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NCBI Trace Archive

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FASTA Sequence Format

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net alignment annotation Format

The net file format is used to describe the axtNet data that underlie the net alignment annotations in the Genome Browser.

CLUSTAL-W Alignment Format

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nucleotide inFormation binary Format

The .nib format pre-dates the .2bit format and is less compact. It describes a DNA sequence by packing two bases into each byte.

A Gold Path format

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Pre-Clustering File Format

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Binary Probe Map Format

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BLAST-like Alignment Tool Format

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BGMUT

Blood Group Antigen Gene Mutation Database

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine