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BAGEL4

Names
More detailed information about this field from each metasource.

BAGEL4
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

bagel4
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

Other names: bagel4

Names

More detailed information about this field from each metasource.

BAGEL4

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

bagel4

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

Mine bacterial (meta-)genomic DNA for bacteriocins and RiPPs. Additionally it provides databases and a BLAST against the core peptide databases.

Description

More detailed information about this field from each metasource.

Mine bacterial (meta-)genomic DNA for bacteriocins and RiPPs. Additionally it provides databases and a BLAST against the core peptide databases.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

Webpage:

http://bagel4.molgenrug.nl/

Webpage

More detailed information about this field from each metasource.

http://bagel4.molgenrug.nl/

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gky383
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

http://dx.doi.org/10.1093/nar/gky383

Tags:

Tags
More detailed information about this field from each metasource.

metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

metagenomics small molecule

More to explore:

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SporeWeb

Regulatory pathways during the sporulation cycle of Bacillus subtilis

MINE

Enhanced biochemical coverage for peak identification in untargeted metabolomics.

Bactibase: database dedicated to bacteriocins

BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by both Gram-positive and Gram-negative bacteria. The information in this database is very easy to extrac ...

PlantsDB

Structured and interconnected genome and gene data for 12 major plant species ranging from model organisms like Arabidopsis to important crops, like wheat. Additionally it provides a platform for inte ...

LABiocin database

A new database designed specifically for Lactic Acid Bacteria bacteriocins | Bacteriocins from lactic acid bacteria (LAB) are successfully applied as natural alternatives to food preservation and to a ...

Bacterial CSDB (BCSDB)

Bacterial Carbohydrate Structure Database (BCSDB) stores published data on glycans and glycoconjugates of bacterial and archaean origin. It provides data on structures, bibliography, taxonomy, 1H and ...

Het-PDB Navi

Het-PDB Navi is a database that collects small molecules found in Protein Data Bank (PDB). An atomic reality of protein function is based on interactions between a protein and another molecule. One of ...

VirOligo

VirOligo is a database of virus-specific oligonucleotides. VirOligo contains PCR primers and hybridization probes used for detection of viral nucleic acids and the experimental conditions used in thei ...

MGnify

EBI Metagenomics has changed its name to MGnify to reflect a change in scope. This is a free-to-use resource aiming at supporting all metagenomics researchers. The service is an automated pipeline for ...

meta.MicrobesOnline

A suite of Web-based comparative genomic tools for metagenome analysis

Database of MHC Ligands and Peptide Motifs

SYFPEITHI is a database comprising more than 7000 peptide sequences known to bind class I and class II MHC molecules.

BBMRI-NL catalog

Database of collections of biomaterial and associated data subsumed under the umbrella of BBMRI-NL.

Locus Reference Genomic sequences

Each LRG is stable genomic DNA sequence for a region of the human genome

Antimicrobial Peptide Database

The Antimicrobial Peptide Database (APD) contains information on antimicrobial peptides from across a wide taxonomic range. It includes a glossary, nomenclature, classification, information search, pr ...

CanGEM

Gene copy number changes in cancer

AdaLab-meta ontology

AdaLab meta ontology.

Database of Bacterial Exotoxins for Human

DBETH is the Database of Bacterial Exotoxins for Human. The aim of this database is to assemble information on the toxins responsible for causing bacterial pathogenesis in humans.

Minimum Information About a Peptide Array Experiment

These are preliminary guidelines describing the Minimum Information About a Peptide-Array Experiment (MIAPepAE). Described is a checklist of data and meta-data that should accompany a peptide-array ex ...

Scholars' Mine

Scholars' Mine is an online collection of scholarly and creative works produced by the faculty, staff, and students of the Missouri University of Science and Technology. This digital repository is a s ...

LINCS Extended Metadata Standard: Small molecules

LINCS Production Phase 2 Extended Metadata Standards were developed by the LINCS consortium with the goal of generating an integrated view across the diverse LINCS data resources. These guidelines are ...

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Service status

Reach us:
[email protected]

Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine

BAGEL4 Names More detailed information about this field from each metasource. × BAGEL4 metasource: bio.tools version: extracted_at: 2022-11-04T11:33:38.404550 bagel4 metasource: bio.tools version: extracted_at: 2022-11-04T11:33:38.404550 Close

Webpage:

Publications: Publications More detailed information about this field from each metasource. × http://dx.doi.org/10.1093/nar/gky383 metasource: bio.tools version: extracted_at: 2022-11-04T11:33:38.404550 Close

Tags: Tags More detailed information about this field from each metasource. × metagenomics metasource: bio.tools version: extracted_at: 2022-11-04T11:33:38.404550 small molecules metasource: bio.tools version: extracted_at: 2022-11-04T11:33:38.404550 Close

More to explore:

1/20

SporeWeb

MINE

Bactibase: database dedicated to bacteriocins

PlantsDB

LABiocin database

Bacterial CSDB (BCSDB)

Het-PDB Navi

VirOligo

MGnify

meta.MicrobesOnline

Database of MHC Ligands and Peptide Motifs

BBMRI-NL catalog

Locus Reference Genomic sequences

Antimicrobial Peptide Database

CanGEM

AdaLab-meta ontology

Database of Bacterial Exotoxins for Human

Minimum Information About a Peptide Array Experiment

Scholars' Mine

LINCS Extended Metadata Standard: Small molecules

BAGEL4

Names
More detailed information about this field from each metasource.

BAGEL4
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

bagel4
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gky383
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

Tags:

Tags
More detailed information about this field from each metasource.

metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550

small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:38.404550