ArchDB

Other names: ArchDB14, archdb

ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.

Webpage:
http://sbi.imim.es/archdb

Publications:

Tags:

classification protein secondary protein structure structure protein structure protein structural motifs and surfaces

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