Tag: brain

Found 36 sources
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NeuroML is a model description language developed in XML (extensible Markup Language) that was created to facilitate data archiving, data and model exchange, database creation, and model publication in the neurosciences. One of the goals of the Neuro ...

Mouse Phenome Database

Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public so ...

ABA Adult Mouse Brain

ABA Adult Mouse Brain is a standardised collection of the expression patterns of thousands of adult brain genes. This resource can be used for a vast array of research on brain organisation and function. There are lighter versions of this ontology th ...

Human Connectome Project

The Human Connectome Project (HCP) houses and distributes public connectome study data for a series of studies that focus on the connections within the human brain.


The OpenNeuro project (formerly known as the OpenfMRI project) was established in 2010 to provide a resource for researchers interested in making their neuroimaging data openly available to the research community. It is managed by Russ Poldrack and C ...


ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. ModelDB is tightly coupled with NeuronDB. Models can be coded in any language for any environment. Model code can be viewed before downl ...

Minimum Information about an fMRI Study

These reporting guidelines were developed by the Committee on Best Practices in Data Analysis and Sharing (COBIDAS) of the Organization for Human Brain Mapping.

Neuroimaging Informatics Tools and Resources Collaboratory

Neuroimaging Informatics Tools and Resources Collaboratory (NITRC) facilitates finding and comparing neuroimaging resources for functional and structural neuroimaging analyses including popular tools as well as those that once might have been hidden ...


This resource details DNA methylation profiles in human and mouse brain. This database includes genome-wide DNA methylation profiles for human and mouse brains. The DNA methylation profiles were generated by Methylation Mapping Analysis by Paired-end ...

The Neuroscience Lexicon

NeuroLex builds upon BIRNLex (Biomedical Informatics Research Network Project Lexicon) and is built from the core ontology, NIFSTD, in a modular fashion, with separate modules covering major domains of neuroscience: anatomy, cell, subcellular, molecu ...

Virtual Fly Brain

VFB is an interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of Drosophila melanogaster. Our goal is to make it easier for researchers to find relevant anatomical information and reagent ...

Minimal Information for Neural ElectroMagnetic Ontologies

Minimal Information for Neural ElectroMagnetic Ontologies (MINEMO; formerly "MIEME" or "MINIerp") is the minimal set of experiment meta-data that is required for datasets that are used in the NEMO project. MINEMO extends MINI (Minimal Information for ...

Cerebrotendinous Xanthomatosis Ontology

The ontology represents CTX phenotypes, genetic variants, and bidirectional relationships between them though a patient model. The CTX ontology was build reusing the Human Phenotype Ontology (HPO) and the Snomed ct ontologies. A set of temporal clini ...

Brainstem Connectome

Database of all known neuronal connections of the rat brainstem. Connections are directed, weighted and bilateral. It is built using the neuroVIISAS platform. The Brainstem Connectome is a highly structured neuroontology composed of datasets from ove ...

Federal Interagency Traumatic Brain Injury Research (FITBIR) Informatics System

The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system is an extensible, scalable informatics platform for TBI relevant imaging, assessment, genomics, and other data types. It was developed to share data across the entire ...

Neuroscience Information Framework (NIF)

NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web.

Minimum Information about a Neuroscience Investigation

This module represents the formalised opinion of the authors and the CARMEN consortium, which identifies the minimum information required to report the use of electrophysiology in a neuroscience study, for submission to the CARMEN system

Minimum Information About a Spinal Cord Injury experiment

Standards for “Minimum Information about a Animal Spinal Cord Injury Experiment” (MIASCI) facilitates bioinformatic efforts and allow investigators to more accurately replicate and extend studies.

The Pain and Interoception Imaging Network

The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scans (MRI, fMRI and DTI) hosted at UCLA and open to all pain investigators.

Neural ElectroMagnetic Ontologies

Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis ...

Neuroimaging Data Model

The Neuroimaging Data Model (NIDM) is a collection of specification documents and examples that outline a domain specific extension to the W3C Provenance Data Model (PROV-DM) for the exchange and sharing of human brain imaging data. The goal of the d ...


NIDM-Results is a data model that enable sharing neuroimaging results using a common descriptive standard across neuroimaging software. NIDM-Results focuses on mass-univariate studies and is mostly targeted at fMRI but is also suitable for anatomical ...


Brainlife is an open, online platform that provides seamless access to cloud computing infrastructure and brain data and data derivatives. It aims to address challenges to neuroscience open sharing and reproducibility by providing integrative mechani ...

Brain Region & Cell Type Terminology

The Brain Region and Cell Type terminology (BRCT) describes brain anatomy with a top-down granularity, from gross regions to cell types. This resource has been created for use in the IMI-funded AETIONOMY project (www.aetionomy.org).

Computer Assisted Brain Injury Rehabilitation Ontology

CABRO is a web ontology for the semantic representation of the computer assisted brain trauma rehabilitation domain. This research area employs the use of robotic devices, adaptation software and machine learning to facilitate interactive, adaptive a ...

Donders Repository

The Donders Institute for Brain, Cognition and Behavior at the Radboud University created the Donders Repository for archiving, preserving and sharing the research data generated and processed at the institute.

Neuroscience Information Framework Dysfunction

This ontology contains the former BIRNLex-Disease, version 1.3.2. -- The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental ...


Brainbase is a data management, collaboration and sharing platform for the human neuroscience community. The platform provides private research collaboration workspaces, tools to flexibly organize and track subjects and sessions within studies, valid ...

Brain Transcriptome Database

The Brain Transcriptome Database (BrainTx) project aims to create an integrated platform to visualize and analyze our original transcriptome data and publicly accessible transcriptome data related to the genetics that underlie the development, functi ...

Collaborative Research in Computational Neuroscience

This website makes data available from the first round of data sharing projects that were supported by the CRCNS funding program. To enable concerted efforts in understanding the brain experimental data and other resources such as stimuli and analysi ...


Alzforum is an independent research project to develop an online community resource to manage scientific knowledge, information, and data about Alzheimer disease (AD).


The goal of the NeuroElectro Project is to extract information about the electrophysiological properties (e.g. resting membrane potentials and membrane time constants) of diverse neuron types from the existing literature and place it into a centraliz ...

OHSU Digital Commons

OHSU Digital Commons is a repository for the scholarly and creative work of Oregon Health & Science University. Developed by the OHSU Library, Digital Commons provides the university community with a platform for publishing and accessing content prod ...

Biomedical Informatics Research Network

>>>!!!<<< As stated 2017-05-16 The BIRN project was finished a few years ago. The web portal is no longer live.>>>!!!<<< BIRN is a national initiative to advance biomedical research through data sharing and online collaboration. It supports multi-si ...

REasons for Geographic and Racial Differences in Stroke Study

REGARDS is an observational study of risk factors for stroke in adults 45 years or older. 30,239 participants were recruited between January 2003 and October 2007. They completed a telephone interview followed by an in-home physical exam. Measurem ...

Cognitive Function and Ageing Study

The Cognitive Function and Ageing Studies (CFAS) are population based studies of individuals aged 65 years and over living in the community, including institutions, which is the only large multi-centred population-based study in the UK that has reach ...

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