macromolecular Crystallographic Information File
Names
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macromolecular Crystallographic Information File
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PDBx/mmCIF
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
macromolecular Crystallographic Information File
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PDBx/mmCIF
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
macromolecular Crystallographic Information File
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PDBx/mmCIF
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PDBx/mmCIF is a dictionary of data archiving macromolecule crystallographic experiments and their results.
Description
More detailed information about this field from each metasource.
PDBx/mmCIF is a dictionary of data archiving macromolecule crystallographic experiments and their results.
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://mmcif.pdb.org/Webpage
More detailed information about this field from each metasource.
http://mmcif.pdb.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Macromolecular Crystallographic Information File
PMID: 18488325
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
STAR/mmCIF: an ontology for macromolecular structure
PMID: 10842738
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Macromolecular Crystallographic Information File
PMID: 18488325
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
STAR/mmCIF: an ontology for macromolecular structure
PMID: 10842738
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Macromolecular Crystallographic Information File
PubMed citations: 44.
44 articles citing: Macromolecular Crystallographic Information File
Merging NMR Data and Computation Facilitates Data-Centered Research. PMID:35111815
Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem. PMID:34395534
Modelling covalent linkages in CCP4. PMID:34076587
PDB-tools web: A user-friendly interface for the manipulation of PDB files. PMID:33111403
The data universe of structural biology. PMID:32695409
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. PMID:31780431
Scalable Extraction of Big Macromolecular Data in Azure Data Lake Environment. PMID:30621295
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. PMID:30357411
R3D-BLAST2: an improved search tool for similar RNA 3D substructures. PMID:29297283
PBxplore: a tool to analyze local protein structure and deformability with Protein Blocks. PMID:29177113
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. PMID:29126160
Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank. PMID:28582506
Towards an efficient compression of 3D coordinates of macromolecular structures. PMID:28362865
The FAIR Guiding Principles for scientific data management and stewardship. PMID:26978244
Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies. PMID:26125026
NMR structure calculation for all small molecule ligands and non-standard residues from the PDB Chemical Component Dictionary. PMID:26123317
Small molecule annotation for the Protein Data Bank. PMID:25425036
On InChI and evaluating the quality of cross-reference links. PMID:24742140
FireDB: a compendium of biological and pharmacologically relevant ligands. PMID:24243844
Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank. PMID:24173824
The role of structural bioinformatics resources in the era of integrative structural biology. PMID:23633580
On the need for an international effort to capture, share and use crystallization screening data. PMID:22442216
Text mining improves prediction of protein functional sites. PMID:22393388
An interview with Phil Bourne, associate director of the RCSB protein data bank. PMID:22366956
mmView: a web-based viewer of the mmCIF format. PMID:21486459
Straightforward and complete deposition of NMR data to the PDBe. PMID:20680401
'Hot' macromolecular crystals. PMID:20161694
Data deposition and annotation at the worldwide protein data bank. PMID:19082769
Representation of viruses in the remediated PDB archive. PMID:18645236
Protein databases on the internet. PMID:18265344
BioMagResBank. PMID:17984079
Visualization software for molecular assemblies. PMID:17728125
firestar--prediction of functionally important residues using structural templates and alignment reliability. PMID:17584799
FireDB--a database of functionally important residues from proteins of known structure. PMID:17132832
A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank. PMID:17069453
Deposit3D: a tool for automating structure depositions to the Protein Data Bank. PMID:16511167
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. PMID:15608185
The distribution and query systems of the RCSB Protein Data Bank. PMID:14681399
Tools for the automatic identification and classification of RNA base pairs. PMID:12824344
The Protein Data Bank and structural genomics. PMID:12520059
E-MSD: the European Bioinformatics Institute Macromolecular Structure Database. PMID:12520052
The PDB data uniformity project. PMID:11125095
The ASTRAL compendium for protein structure and sequence analysis. PMID:10592239
The Protein Data Bank. PMID:10592235 -
STAR/mmCIF: an ontology for macromolecular structure
PubMed citations: 24.
24 articles citing: STAR/mmCIF: an ontology for macromolecular structure
Ten things I `hate' about refinement. PMID:34866607
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. PMID:34676613
How structural biology transformed studies of transcription regulation. PMID:33957125
The Protein Data Bank Archive. PMID:33950382
Alignment of Biological Sequences with Jalview. PMID:33289895
BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. PMID:33075050
TopMatch-web: pairwise matching of large assemblies of protein and nucleic acid chains in 3D. PMID:32479639
Protein Data Bank: the single global archive for 3D macromolecular structure data. PMID:30357364
UCSF ChimeraX: Meeting modern challenges in visualization and analysis. PMID:28710774
Databases, Repositories, and Other Data Resources in Structural Biology. PMID:28573593
Web3DMol: interactive protein structure visualization based on WebGL. PMID:28482028
A public database of macromolecular diffraction experiments. PMID:27841751
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures. PMID:27789697
Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts. PMID:26508758
Implementation of linked data in the life sciences at BioHackathon 2011. PMID:25973165
Applied and implied semantics in crystallographic publishing. PMID:22932420
Abstractions, algorithms and data structures for structural bioinformatics in PyCogent. PMID:22479120
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format. PMID:21976737
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank. PMID:21382834
PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan. PMID:20798081
Structural motifs recurring in different folds recognize the same ligand fragments. PMID:19527512
BioMagResBank. PMID:17984079
BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank. PMID:12766409
The Protein Data Bank and structural genomics. PMID:12520059
Tags:
Tags
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molecular entity
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
x-ray crystallography assay
metasource: Fairsharing.org
version: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
molecular entity
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
x-ray crystallography assay
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBx/mmCIF; macromolecular Crystallographic Information File; DOI: https://doi.org/10.25504/FAIRsharing.fd28en; Last edited: Feb. 15, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
molecular entity molecular structure protein x-ray crystallography assay
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