Characterization and analysis of the promoter region of monodehydroascorbate reductase 4 (CpMDAR4) in papaya.
PMID:35920937
Translating the Arabidopsis thaliana Peroxisome Proteome Insights to Solanum lycopersicum: Consensus Versus Diversity.
PMID:35912119
Interaction of Nitrate Assimilation and Photorespiration at Elevated CO2.
PMID:35845694
Genome-Wide Identification and Structural Characterization of Growth-Regulating Factors (GRFs) in Actinida eriantha and Actinidia chinensis.
PMID:35807582
NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis.
PMID:35787631
The rolB-transgenic Nicotiana tabacum plants exhibit upregulated ARF7 and ARF19 gene expression.
PMID:35774625
Bookend: precise transcript reconstruction with end-guided assembly.
PMID:35768836
Inferring functional communities from partially observed biological networks exploiting geometric topology and side information.
PMID:35760826
GinkgoDB: an ecological genome database for the living fossil, Ginkgo biloba.
PMID:35758513
Recombination landscape divergence between populations is marked by larger low-recombining regions in domesticated rye.
PMID:35687854
Genome-Wide Identification and Functional Characterization of Auxin Response Factor (ARF) Genes in Eggplant.
PMID:35682898
Developing a bioinformatics pipeline for comparative protein classification analysis.
PMID:35668373
Dissecting the Genetic Architecture of Carbon Partitioning in Sorghum Using Multiscale Phenotypes.
PMID:35665170
Image-Based Analysis Revealing the Molecular Mechanism of Peroxisome Dynamics in Plants.
PMID:35592252
Role of LOC_Os01g68450, Containing DUF2358, in Salt Tolerance Is Mediated via Adaptation of Absorbed Light Energy Dissipation.
PMID:35567234
Deciphering Pleiotropic Signatures of Regulatory SNPs in Zea mays L. Using Multi-Omics Data and Machine Learning Algorithms.
PMID:35563516
Genome-Wide Association Study and Genomic Selection for Proteinogenic Methionine in Soybean Seeds.
PMID:35557723
Exploring synergies between plant metabolic modelling and machine learning.
PMID:35521559
Comparative Analysis of the Chalcone-Flavanone Isomerase Genes in Six Citrus Species and Their Expression Analysis in Sweet Orange (Citrus sinensis).
PMID:35495138
The Arabidopsis gene co-expression network.
PMID:35492683
Genome-wide mediation analysis: an empirical study to connect phenotype with genotype via intermediate transcriptomic data in maize.
PMID:35460234
Solanum galapagense-derived purple tomato fruit color is conferred by novel alleles of the anthocyanin fruit and atroviolacium loci.
PMID:35449754
Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy.
PMID:35449401
An interolog-based barley interactome as an integration framework for immune signaling.
PMID:35435213
TE Density: a tool to investigate the biology of transposable elements.
PMID:35413944
Linnemannia elongata (Mortierellaceae) stimulates Arabidopsis thaliana aerial growth and responses to auxin, ethylene, and reactive oxygen species.
PMID:35413060
The Sunflower WRINKLED1 Transcription Factor Regulates Fatty Acid Biosynthesis Genes through an AW Box Binding Sequence with a Particular Base Bias.
PMID:35406952
Harmonizing model organism data in the Alliance of Genome Resources.
PMID:35380658
SEED LIPID DROPLET PROTEIN1, SEED LIPID DROPLET PROTEIN2, and LIPID DROPLET PLASMA MEMBRANE ADAPTOR mediate lipid droplet-plasma membrane tethering.
PMID:35348751
Tissue-Specific Expression of the Terpene Synthase Family Genes in Rosa chinensis and Effect of Abiotic Stress Conditions.
PMID:35328100
Detection and Analysis of Syntenic Quantitative Trait Loci Controlling Cell Wall Quality in Angiosperms.
PMID:35310628
Signaling Mechanisms by Arabidopsis Cryptochromes.
PMID:35295637
Identification of Putative Markers of Non-infectious Bud Failure in Almond [Prunus dulcis (Mill.) D.A. Webb] Through Genome Wide DNA Methylation Profiling and Gene Expression Analysis in an Almond × Peach Hybrid Population.
PMID:35237284
Antifungal activity of an artificial peptide aptamer SNP-D4 against Fusarium oxysporum.
PMID:35223198
Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera.
PMID:35222971
Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components.
PMID:35218346
An in-frame deletion mutation in the degron tail of auxin coreceptor IAA2 confers resistance to the herbicide 2,4-D in Sisymbrium orientale.
PMID:35217601
Identification of the CesA Subfamily and Functional Analysis of GhMCesA35 in Gossypium hirsutum L.
PMID:35205337
Systems scale characterization of circadian rhythm pathway in Camellia sinensis.
PMID:35116135
The Grape Gene Reference Catalogue as a Standard Resource for Gene Selection and Genetic Improvement.
PMID:35111182
SorghumBase: a web-based portal for sorghum genetic information and community advancement.
PMID:35015132
NHX Gene Family in Camellia sinensis: In-silico Genome-Wide Identification, Expression Profiles, and Regulatory Network Analysis.
PMID:34987532
Foster thy young: enhanced prediction of orphan genes in assembled genomes.
PMID:34928390
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE).
PMID:34911434
Evidence for thermosensitivity of the cotton (Gossypium hirsutum L.) immature fiber (im) mutant via hypersensitive stomatal activity.
PMID:34898615
Both Binding Strength and Evolutionary Accessibility Affect the Population Frequency of Transcription Factor Binding Sequences in Arabidopsis thaliana.
PMID:34894231
Species-specific partial gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection.
PMID:34875081
Heterochromatin is a quantitative trait associated with spontaneous epiallele formation.
PMID:34845222
Genomic Regions Associated with Fusarium Wilt Resistance in Flax.
PMID:34830265
Successful intergeneric transfer of a major apple scab resistance gene (Rvi6) from apple to pear and precise comparison of the downstream molecular mechanisms of this resistance in both species.
PMID:34802418
Primer Designing for Amplifying an AT-Rich Promoter from Arabidopsis thaliana.
PMID:34773619
In-silico genome wide analysis of Mitogen activated protein kinase kinase kinase gene family in C. sinensis.
PMID:34735479
PCMDB: a curated and comprehensive resource of plant cell markers.
PMID:34718712
Arabidopsis thaliana PrimPol is a primase and lesion bypass DNA polymerase with the biochemical characteristics to cope with DNA damage in the nucleus, mitochondria, and chloroplast.
PMID:34663822
Delayed Protein Changes During Seed Germination.
PMID:34603360
Genome report: a draft genome of Alliaria petiolata (garlic mustard) as a model system for invasion genetics.
PMID:34599816
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation.
PMID:34551440
Genomic impact of stress-induced transposable element mobility in Arabidopsis.
PMID:34551439
The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
PMID:34543503
Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives.
PMID:34540375
Data Management and Modeling in Plant Biology.
PMID:34539712
Genome-Wide Association Study of Seed Folate Content in Common Bean.
PMID:34531882
Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements.
PMID:34503979
Vision, challenges and opportunities for a Plant Cell Atlas.
PMID:34491200
Landscape of the Dark Transcriptome Revealed Through Re-mining Massive RNA-Seq Data.
PMID:34484307
Crosstalk between the chloroplast protein import and SUMO systems revealed through genetic and molecular investigation in Arabidopsis.
PMID:34473053
Dissection of Allelic Variation Underlying Floral and Fruit Traits in Flare Tree Peony (Paeonia rockii) Using Association Mapping.
PMID:34456963
Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability.
PMID:34453006
Finding differentially expressed sRNA-Seq regions with srnadiff.
PMID:34415926
Extended mining of the oil biosynthesis pathway in biofuel plant Jatropha curcas by combined analysis of transcriptome and gene interactome data.
PMID:34407772
A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics.
PMID:34404410
Comprehensive in silico Characterization of Universal Stress Proteins in Rice (Oryza sativa L.) With Insight Into Their Stress-Specific Transcriptional Modulation.
PMID:34394169
Lipid Body Dynamics in Shoot Meristems: Production, Enlargement, and Putative Organellar Interactions and Plasmodesmal Targeting.
PMID:34367200
The meristem-associated endosymbiont Methylorubrum extorquens DSM13060 reprograms development and stress responses of pine seedlings.
PMID:34328183
Large-scale translatome profiling annotates the functional genome and reveals the key role of genic 3' untranslated regions in translatomic variation in plants.
PMID:34327320
Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolata.
PMID:34322142
Functional Diversification of euANT/PLT Genes in Oryza sativa Panicle Architecture Determination.
PMID:34305984
Multi-omics approach highlights differences between RLP classes in Arabidopsis thaliana.
PMID:34284718
Dynamic Regulatory Event Mining by iDREM in Large-Scale Multi-omics Datasets During Biotic and Abiotic Stress in Plants.
PMID:34251627
The Plastid-Localized AtFtsHi3 Pseudo-Protease of Arabidopsis thaliana Has an Impact on Plant Growth and Drought Tolerance.
PMID:34249066
Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression.
PMID:34235544
Genome-Wide Investigation of N6-Methyladenosine Regulatory Genes and Their Roles in Tea (Camellia sinensis) Leaves During Withering Process.
PMID:34211493
Network-based analysis of virulence factors for uncovering Aeromonas veronii pathogenesis.
PMID:34162325
Extensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes.
PMID:34140968
Transcriptomic Analysis of Resistant and Susceptible Responses in a New Model Root-Knot Nematode Infection System Using Solanum torvum and Meloidogyne arenaria.
PMID:34122492
De novo activated transcription of inserted foreign coding sequences is inheritable in the plant genome.
PMID:34111139
R2DT is a framework for predicting and visualising RNA secondary structure using templates.
PMID:34108470
Origin and Evolution of the Cannabinoid Oxidocyclase Gene Family.
PMID:34100927
From Microscopy to Nanoscopy: Defining an Arabidopsis thaliana Meiotic Atlas at the Nanometer Scale.
PMID:34084178
noisyR: enhancing biological signal in sequencing datasets by characterizing random technical noise.
PMID:34076236
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana.
PMID:34039279
Unravelling the molecular basis of the dominant negative effect of myosin XI tails on P-bodies.
PMID:34038472
Gene Ontology Meta Annotator for Plants (GOMAP).
PMID:34034755
TGIF-DB: terse genomics interface for developing botany.
PMID:33985559
The amino acid permease (AAP) genes CsAAP2A and SlAAP5A/B are required for oomycete susceptibility in cucumber and tomato.
PMID:33934492
Annotation and Molecular Characterisation of the TaIRO3 and TaHRZ Iron Homeostasis Genes in Bread Wheat (Triticum aestivum L.).
PMID:33925484
Predictive Models of Genetic Redundancy in Arabidopsis thaliana.
PMID:33871641
Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce.
PMID:33846635
A multilayered cross-species analysis of GRAS transcription factors uncovered their functional networks in plant adaptation to the environment.
PMID:33842016
The Candidate Photoperiod Gene MtFE Promotes Growth and Flowering in Medicago truncatula.
PMID:33841463
Arabidopsis thaliana Genes Associated with Cucumber mosaic virus Virulence and Their Link to Virus Seed Transmission.
PMID:33801693
Transcriptional Regulatory Networks Associate with Early Stages of Potato Virus X Infection of Solanum tuberosum.
PMID:33799566
Genome-wide identification and functional characterization of the PheE2F/DP gene family in Moso bamboo.
PMID:33781213
The Arabidopsis SMALL AUXIN UP RNA32 Protein Regulates ABA-Mediated Responses to Drought Stress.
PMID:33777065
EORNA, a barley gene and transcript abundance database.
PMID:33767193
Genome-wide identification of MIKC-type genes related to stamen and gynoecium development in Liriodendron.
PMID:33753780
Genome-wide analysis of AP2/ERF superfamily in lotus (Nelumbo nucifera) and the association between NnADAP and rhizome morphology.
PMID:33750315
Argonaute 5 family proteins play crucial roles in the defence against Cymbidium mosaic virus and Odontoglossum ringspot virus in Phalaenopsis aphrodite subsp. formosana.
PMID:33749125
Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and allele structure.
PMID:33690630
Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress.
PMID:33664420
Genome-wide analysis of fluoride exporter genes in plants.
PMID:33643759
Fine mapping of a thrips resistance QTL in Capsicum and the role of diterpene glycosides in the underlying mechanism.
PMID:33609141
Genetic mechanisms associated with floral initiation and the repressive effect of fruit on flowering in apple (Malus x domestica Borkh).
PMID:33606701
Mapping rRNA 2'-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants.
PMID:33596769
Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense).
PMID:33588756
A Pipeline towards the Biochemical Characterization of the Arabidopsis GT14 Family.
PMID:33572987
Genome-wide analysis of growth-regulating factors (GRFs) in Triticum aestivum.
PMID:33552727
Multiscale plant modeling: from genome to phenome and beyond.
PMID:33543231
Impact of Long-Term Organic and Mineral Fertilization on Rhizosphere Metabolites, Root-Microbial Interactions and Plant Health of Lettuce.
PMID:33519736
Genome-wide characterization of the WAK gene family and expression analysis under plant hormone treatment in cotton.
PMID:33509085
De Novo Mutation and Rapid Protein (Co-)evolution during Meiotic Adaptation in Arabidopsis arenosa.
PMID:33502506
Analyzing the G3BP-like gene family of Arabidopsis thaliana in early turnip mosaic virus infection.
PMID:33500425
Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance.
PMID:33483627
Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana.
PMID:33444439
A Comprehensive Transcriptional Profiling of Pepper Responses to Root-Knot Nematode.
PMID:33333784
Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana.
PMID:33322028
Computing on Phenotypic Descriptions for Candidate Gene Discovery and Crop Improvement.
PMID:33313544
Dual targeting of DDX3 and eIF4A by the translation inhibitor rocaglamide A.
PMID:33296667
Classification of Grain Amaranths Using Chromosome-Level Genome Assembly of Ramdana, A. hypochondriacus.
PMID:33262776
Identification of the enzymes responsible for m2,2G and acp3U formation on cytosolic tRNA from insects and plants.
PMID:33253256
Sugar Signaling and Post-transcriptional Regulation in Plants: An Overlooked or an Emerging Topic?
PMID:33224165
Genome-Wide Analysis of the Five Phosphate Transporter Families in Camelina sativa and Their Expressions in Response to Low-P.
PMID:33171866
Genome-Wide Identification and Functional Characterization of the Cation Proton Antiporter (CPA) Family Related to Salt Stress Response in Radish (Raphanus sativus L.).
PMID:33158201
SATMF Suppresses the Premature Senescence Phenotype of the ATM Loss-of-Function Mutant and Improves Its Fertility in Arabidopsis.
PMID:33143308
Determinants of correlated expression of transcription factors and their target genes.
PMID:33104784
OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.
PMID:33084874
From landrace to modern hybrid broccoli: the genomic and morphological domestication syndrome within a diverse B. oleracea collection.
PMID:33082966
NAMS webserver: coding potential assessment and functional annotation of plant transcripts.
PMID:33080021
Computational Identification and Comparative Analysis of Conserved miRNAs and Their Putative Target Genes in the Juglans regia and J. microcarpa Genomes.
PMID:33050178
TERMINAL FLOWER 1-FD complex target genes and competition with FLOWERING LOCUS T.
PMID:33046692
Genome-wide identification and characterization of ABA receptor PYL gene family in rice.
PMID:32998689
A systematic comparison of chloroplast genome assembly tools.
PMID:32988404
Genomic Prediction Informed by Biological Processes Expands Our Understanding of the Genetic Architecture Underlying Free Amino Acid Traits in Dry Arabidopsis Seeds.
PMID:32978264
tRNA ADENOSINE DEAMINASE 3 is required for telomere maintenance in Arabidopsis thaliana.
PMID:32959123
MAPK cascade gene family in Camellia sinensis: In-silico identification, expression profiles and regulatory network analysis.
PMID:32894062
The Absence of C-5 DNA Methylation in Leishmania donovani Allows DNA Enrichment from Complex Samples.
PMID:32824654
The Existence and Localization of Nuclear snoRNAs in Arabidopsis thaliana Revisited.
PMID:32806552
Calcium Binding by Arabinogalactan Polysaccharides Is Important for Normal Plant Development.
PMID:32769130
Contiguous and stochastic CHH methylation patterns of plant DRM2 and CMT2 revealed by single-read methylome analysis.
PMID:32762764
Family-Specific Gains and Losses of Protein Domains in the Legume and Grass Plant Families.
PMID:32694909
The oilseed rape developmental expression resource: a resource for the investigation of gene expression dynamics during the floral transition in oilseed rape.
PMID:32693783
In vivo Reporters for Visualizing Alternative Splicing of Hormonal Genes.
PMID:32650629
VviERF6Ls: an expanded clade in Vitis responds transcriptionally to abiotic and biotic stresses and berry development.
PMID:32646368
Computational analysis of microarray data of Arabidopsis thaliana challenged with Alternaria brassicicola for identification of key genes in Brassica.
PMID:32607787
Measuring Genome Sizes Using Read-Depth, k-mers, and Flow Cytometry: Methodological Comparisons in Beetles (Coleoptera).
PMID:32601059
Network-guided search for genetic heterogeneity between gene pairs.
PMID:32573681
Abundant expression of maternal siRNAs is a conserved feature of seed development.
PMID:32541052
A two-tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae.
PMID:32477841
mmannot: How to improve small-RNA annotation?
PMID:32463818
Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves.
PMID:32405027
Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.).
PMID:32377449
Loss of function of CRT1a (calreticulin) reduces plant susceptibility to Verticillium longisporum in both Arabidopsis thaliana and oilseed rape (Brassica napus).
PMID:32358986
Genetic Architecture of Early Vigor Traits in Wild Soybean.
PMID:32354037
Genetic controls of short- and long-term stomatal CO2 responses in Arabidopsis thaliana.
PMID:32296835
Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex.
PMID:32271752
Test of Arabidopsis Space Transcriptome: A Discovery Environment to Explore Multiple Plant Biology Spaceflight Experiments.
PMID:32265943
Using multiple reference genomes to identify and resolve annotation inconsistencies.
PMID:32264824
Splicing conservation signals in plant long noncoding RNAs.
PMID:32241834
The Position and Complex Genomic Architecture of Plant T-DNA Insertions Revealed by 4SEE.
PMID:32235482
Characterization of Arabidopsis thaliana Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways.
PMID:32213639
Lack of endoplasmic reticulum quality control (ERQC) promotes tonoplast (TP) targeting of KORRIGAN 1 (KOR1).
PMID:32195619
Root Skewing-Associated Genes Impact the Spaceflight Response of Arabidopsis thaliana.
PMID:32194611
Specific functions for Mediator complex subunits from different modules in the transcriptional response of Arabidopsis thaliana to abiotic stress.
PMID:32193425
The beta Subunit of Nascent Polypeptide Associated Complex Plays A Role in Flowers and Siliques Development of Arabidopsis thaliana.
PMID:32192231
Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach.
PMID:32180783
Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant Arabidopsis thaliana.
PMID:32138290
In the presence of population structure: From genomics to candidate genes underlying local adaptation.
PMID:32128123
Arabidopsis RanBP2-Type Zinc Finger Proteins Related to Chloroplast RNA Editing Factor OZ1.
PMID:32121603
Major Changes in Plastid Protein Import and the Origin of the Chloroplastida.
PMID:32088393
Mitochondrial DNA Repair in an Arabidopsis thaliana Uracil N-Glycosylase Mutant.
PMID:32085412
Natural variation in DNA methylation homeostasis and the emergence of epialleles.
PMID:32071208
Genome-wide association and epistatic interactions of flowering time in soybean cultivar.
PMID:31968016
PAREameters: a tool for computational inference of plant miRNA-mRNA targeting rules using small RNA and degradome sequencing data.
PMID:31943065
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees.
PMID:31892954
Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana.
PMID:31887137
Local adaptation of a dominant coastal tree to freshwater availability and solar radiation suggested by genomic and ecophysiological approaches.
PMID:31882752
GenFam: A web application and database for gene family-based classification and functional enrichment analysis.
PMID:31844835
TRANSNAP: a web database providing comprehensive information on Japanese pear transcriptome.
PMID:31831861
Investigations into a putative role for the novel BRASSIKIN pseudokinases in compatible pollen-stigma interactions in Arabidopsis thaliana.
PMID:31829135
Leaf status and environmental signals jointly regulate proline metabolism in winter oilseed rape.
PMID:31807778
Hybrid de novo transcriptome assembly of poinsettia (Euphorbia pulcherrima Willd. Ex Klotsch) bracts.
PMID:31775622
Advances in Omics Approaches for Abiotic Stress Tolerance in Tomato.
PMID:31775241
The effector GpRbp-1 of Globodera pallida targets a nuclear HECT E3 ubiquitin ligase to modulate gene expression in the host.
PMID:31756029
Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought.
PMID:31722667
The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response.
PMID:31721759
The Acetate Pathway Supports Flavonoid and Lipid Biosynthesis in Arabidopsis.
PMID:31719153
Further Elucidation of the Argonaute and Dicer Protein Families in the Model Grass Species Brachypodium distachyon.
PMID:31708948
MaGenDB: a functional genomics hub for Malvaceae plants.
PMID:31665439
Double triage to identify poorly annotated genes in maize: The missing link in community curation.
PMID:31658277
Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.).
PMID:31651257
Novel Informatic Tools to Support Functional Annotation of the Durum Wheat Genome.
PMID:31649706
Spatially resolved transcriptomics reveals plant host responses to pathogens.
PMID:31624491
Complex Horticultural Quality Traits in Broccoli Are Illuminated by Evaluation of the Immortal BolTBDH Mapping Population.
PMID:31620146
Effect of Salt Stress on Cytosine Methylation within GL2, An Arabidopsis thaliana Gene Involved in Root Epidermal Cell Differentiation. Absence of Inheritance in the Unstressed Progeny.
PMID:31509941
Critical Review of Plant Cell Wall Matrix Polysaccharide Glycosyltransferase Activities Verified by Heterologous Protein Expression.
PMID:31379900
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth.
PMID:31361386
Genome-wide analysis of the NF-Y gene family in peach (Prunus persica L.).
PMID:31349783
Isolation of Open Chromatin Identifies Regulators of Systemic Acquired Resistance.
PMID:31337712
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
PMID:31328773
Transcriptional Regulation of the Glucose-6-Phosphate/Phosphate Translocator 2 Is Related to Carbon Exchange Across the Chloroplast Envelope.
PMID:31316533
CyMIRA: The Cytonuclear Molecular Interactions Reference for Arabidopsis.
PMID:31282937
Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization.
PMID:31266899
artMAP: A user-friendly tool for mapping ethyl methanesulfonate-induced mutations in Arabidopsis.
PMID:31245783
Waterlogging affects plant morphology and the expression of key genes in tef (Eragrostis tef).
PMID:31245721
Maize GO Annotation-Methods, Evaluation, and Review (maize-GAMER).
PMID:31245718
Genome of the tropical plant Marchantia inflexa: implications for sex chromosome evolution and dehydration tolerance.
PMID:31217536
Construction and analysis of an interologous protein-protein interaction network of Camellia sinensis leaf (TeaLIPIN) from RNA-Seq data sets.
PMID:31197449
Loss of Wood Formation Genes in Monocot Genomes.
PMID:31173081
Lateral Root Initiation in the Parental Root Meristem of Cucurbits: Old Players in a New Position.
PMID:31110507
Cercis: A Non-polyploid Genomic Relic Within the Generally Polyploid Legume Family.
PMID:31105714
Admixture mapping in interspecific Populus hybrids identifies classes of genomic architectures for phytochemical, morphological and growth traits.
PMID:31104343
Identification of a role for an E6-like 1 gene in early pollen-stigma interactions in Arabidopsis thaliana.
PMID:31069543
Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures.
PMID:31068632
Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce.
PMID:30990945
The auxin response factor gene family in allopolyploid Brassica napus.
PMID:30958842
The unified rule of phyllotaxis explaining both spiral and non-spiral arrangements.
PMID:30958198
A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour.
PMID:30940818
Tasselseed5 overexpresses a wound-inducible enzyme, ZmCYP94B1, that affects jasmonate catabolism, sex determination, and plant architecture in maize.
PMID:30937397
Construction of the First SNP-Based Linkage Map Using Genotyping-by-Sequencing and Mapping of the Male-Sterility Gene in Leaf Chicory.
PMID:30915092
Selection and validation of reference genes for quantitative Real-Time PCR in Arabis alpina.
PMID:30830921
Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens.
PMID:30828342
Structural introspection of a putative fluoride transporter in plants.
PMID:30800614
RNA-Seq reveals new DELLA targets and regulation in transgenic GA-insensitive grapevines.
PMID:30777012
Development and validation of whole genome-wide and genic microsatellite markers in oil palm (Elaeis guineensis Jacq.): First microsatellite database (OpSatdb).
PMID:30760842
Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs.
PMID:30760640
Isoprene Acts as a Signaling Molecule in Gene Networks Important for Stress Responses and Plant Growth.
PMID:30760638
A galling insect activates plant reproductive programs during gall development.
PMID:30755671
Resistant and susceptible cacao genotypes exhibit defense gene polymorphism and unique early responses to Phytophthora megakarya inoculation.
PMID:30739243
Genome wide analysis of W-box element in Arabidopsis thaliana reveals TGAC motif with genes down regulated by heat and salinity.
PMID:30737427
First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.).
PMID:30727959
Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry.
PMID:30715294
A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation.
PMID:30705745
The Systems Architecture of Molecular Memory in Poplar after Abiotic Stress.
PMID:30705134
Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds.
PMID:30700268
Robust predictions of specialized metabolism genes through machine learning.
PMID:30674669
Fine-mapping and validation of the genomic region underpinning pear red skin colour.
PMID:30651990
Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion.
PMID:30619412
Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis.
PMID:30608232
TCO, a Putative Transcriptional Regulator in Arabidopsis, Is a Target of the Protein Kinase CK2.
PMID:30597831
Genome wide characterization of barley NAC transcription factors enables the identification of grain-specific transcription factors exclusive for the Poaceae family of monocotyledonous plants.
PMID:30592743
Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map.
PMID:30504416
Genome-Wide Analysis of LRR-RLK Gene Family in Four Gossypium Species and Expression Analysis during Cotton Development and Stress Responses.
PMID:30501109
IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing maps with rejection.
PMID:30423081
Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing.
PMID:30401722
Global Analysis of WOX Transcription Factor Gene Family in Brassica napus Reveals Their Stress- and Hormone-Responsive Patterns.
PMID:30400610
PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants.
PMID:30395277
Genetic and transcriptional variations in NRAMP-2 and OPAQUE1 genes are associated with salt stress response in wheat.
PMID:30392081
Overlapping Patterns of Gene Expression Between Gametophyte and Sporophyte Phases in the Fern Polypodium amorphum (Polypodiales).
PMID:30356815
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
PMID:30239679
Mediator of tolerance to abiotic stress ERF6 regulates susceptibility of Arabidopsis to Meloidogyne incognita.
PMID:30160354
RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants.
PMID:30092758
Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance.
PMID:30081841
Short-Term Exposure to Nitrogen Dioxide Provides Basal Pathogen Resistance.
PMID:30076223
GWAS with Heterogeneous Data: Estimating the Fraction of Phenotypic Variation Mediated by Gene Expression Data.
PMID:30068524
Searching for best lower dimensional visualization angles for high dimensional RNA-Seq data.
PMID:30013849
PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules.
PMID:30007348
Spatio-temporal expression dynamics differ between homologues of flowering time genes in the allopolyploid Brassica napus.
PMID:29989238
A comprehensive review of web-based resources of non-coding RNAs for plant science research.
PMID:29989090
A genome-wide scan for correlated mutations detects macromolecular and chromatin interactions in Arabidopsis thaliana.
PMID:29986106
Hub Protein Controversy: Taking a Closer Look at Plant Stress Response Hubs.
PMID:29922309
Network biology discovers pathogen contact points in host protein-protein interactomes.
PMID:29899369
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant.
PMID:29873777
Genetic differentiation in life history traits and thermal stress performance across a heterogeneous dune landscape in Arabidopsis lyrata.
PMID:29846507
Robustness of Transposable Element Regulation but No Genomic Shock Observed in Interspecific Arabidopsis Hybrids.
PMID:29788048
Enhanced Conjugation of Auxin by GH3 Enzymes Leads to Poor Adventitious Rooting in Carnation Stem Cuttings.
PMID:29755501
The nonstop decay and the RNA silencing systems operate cooperatively in plants.
PMID:29672715
Plant Glycine-Rich Proteins in Stress Response: An Emerging, Still Prospective Story.
PMID:29568308
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
PMID:29523711
Transcriptome analysis of response to Plasmodiophora brassicae infection in the Arabidopsis shoot and root.
PMID:29304736
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons.
PMID:29233850
Optimization of PCR conditions for amplifying an AT-rich amino acid transporter promoter sequence with high number of tandem repeats from Arabidopsis thaliana.
PMID:29183338
Identification and Initial Characterization of the Effectors of an Anther Smut Fungus and Potential Host Target Proteins.
PMID:29165363
Defense against Reactive Carbonyl Species Involves at Least Three Subcellular Compartments Where Individual Components of the System Respond to Cellular Sugar Status.
PMID:29150548
Nucleotide patterns aiding in prediction of eukaryotic promoters.
PMID:29141011
NONCODEV5: a comprehensive annotation database for long non-coding RNAs.
PMID:29140524
A Role for the F-Box Protein HAWAIIAN SKIRT in Plant microRNA Function.
PMID:29114080
Extreme Suppression of Lateral Floret Development by a Single Amino Acid Change in the VRS1 Transcription Factor.
PMID:29101279
POTAGE: A Visualisation Tool for Speeding up Gene Discovery in Wheat.
PMID:29085014
Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.
PMID:29078296
A sensitive short read homology search tool for paired-end read sequencing data.
PMID:29072140
The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire.
PMID:29055088
Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.
PMID:28961772
Evidence-based gene models for structural and functional annotations of the oil palm genome.
PMID:28886750
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation.
PMID:28814974
Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.
PMID:28814644
ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.
PMID:28808136
Global temporal dynamic landscape of pathogen-mediated subversion of Arabidopsis innate immunity.
PMID:28798368
Identification of Conserved and Novel MicroRNAs in Blueberry.
PMID:28713413
Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis.
PMID:28693422
Generation of a Collection of Mutant Tomato Lines Using Pooled CRISPR Libraries.
PMID:28646085
Plant cell wall glycosyltransferases: High-throughput recombinant expression screening and general requirements for these challenging enzymes.
PMID:28598995
Naming CRISPR alleles: endonuclease-mediated mutation nomenclature across species.
PMID:28589392
Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia.
PMID:28559476
Molecular dynamics simulations reveal the conformational dynamics of Arabidopsis thaliana BRI1 and BAK1 receptor-like kinases.
PMID:28559283
Genome Wide Identification of Orthologous ZIP Genes Associated with Zinc and Iron Translocation in Setaria italica.
PMID:28555148
The plant cell-wall enzyme AtXTH3 catalyses covalent cross-linking between cellulose and cello-oligosaccharide.
PMID:28443615
ChloroKB: A Web Application for the Integration of Knowledge Related to Chloroplast Metabolic Network.
PMID:28442501
HopBase: a unified resource for Humulus genomics.
PMID:28415075
Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
PMID:28334050
De novo computational identification of stress-related sequence motifs and microRNA target sites in untranslated regions of a plant translatome.
PMID:28276452
Specific Caleosin/Peroxygenase and Lipoxygenase Activities Are Tissue-Differentially Expressed in Date Palm (Phoenix dactylifera L.) Seedlings and Are Further Induced Following Exposure to the Toxin 2,3,7,8-tetrachlorodibenzo-p-dioxin.
PMID:28111588
TOMATOMICS: A Web Database for Integrated Omics Information in Tomato.
PMID:28111364
Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways.
PMID:28077078
Evolution of protein N-glycosylation process in Golgi apparatus which shapes diversity of protein N-glycan structures in plants, animals and fungi.
PMID:28074929
Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes.
PMID:28069893
A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis.
PMID:28066488
Plant genome and transcriptome annotations: from misconceptions to simple solutions.
PMID:28062412
PPero, a Computational Model for Plant PTS1 Type Peroxisomal Protein Prediction.
PMID:28045983
Atypical Protein Phosphatase 2A Gene Families Do Not Expand via Paleopolyploidization.
PMID:28034953
Enhancing the GABI-Kat Arabidopsis thaliana T-DNA Insertion Mutant Database by Incorporating Araport11 Annotation.
PMID:28013277
The BioGRID interaction database: 2017 update.
PMID:27980099
Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
PMID:27920789
Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum.
PMID:27917941
RNAcentral: a comprehensive database of non-coding RNA sequences.
PMID:27794554
CoSpliceNet: a framework for co-splicing network inference from transcriptomics data.
PMID:27793091
Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis.
PMID:27791167
The state of play in higher eukaryote gene annotation.
PMID:27773922
Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly.
PMID:27733515
A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny.
PMID:27711162
Comparative analysis of Cucurbita pepo metabolism throughout fruit development in acorn squash and oilseed pumpkin.
PMID:27688889
Telling plant species apart with DNA: from barcodes to genomes.
PMID:27481790
MATH-Domain Family Shows Response toward Abiotic Stress in Arabidopsis and Rice.
PMID:27446153
phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats.
PMID:27307619
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model.
PMID:26989150
WormBase 2016: expanding to enable helminth genomic research.
PMID:26578572