SubtiWiki

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SubtiWiki

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

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subtiwiki

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

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Other names: subtiwiki

Collaborative resource for the Bacillus community.

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

SubtiWiki 2.0--an integrated database for the model organism Bacillus subtilis
PMID: 26433225

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki
PMID: 20157485

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis
PMID: 19959575

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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The current state of SubtiWiki, the database for the model organism Bacillus subtilis
PMID: 34664671

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

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http://dx.doi.org/10.1093/nar/gkt1002

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• SubtiWiki 2.0--an integrated database for the model organism Bacillus subtilis PubMed citations: 44.

  44 articles citing: SubtiWiki 2.0--an integrated database for the model organism Bacillus subtilis

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  Synthesis and antibacterial activity of iron manganite (FeMnO3) particles against the environmental bacterium Bacillus subtilis. PMID:35492976

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  The current state of SubtiWiki, the database for the model organism Bacillus subtilis. PMID:34664671

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  Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom. PMID:34499567

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  Functional Redundancy and Specialization of the Conserved Cold Shock Proteins in Bacillus subtilis. PMID:34361870

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  The Human Salivary Proteome Wiki: A Community-Driven Research Platform. PMID:34032471

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  Impact of Rap-Phr system abundance on adaptation of Bacillus subtilis. PMID:33850233

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  Different Resource Allocation in a Bacillus subtilis Population Displaying Bimodal Motility. PMID:33782055

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  Essentiality of c-di-AMP in Bacillus subtilis: Bypassing mutations converge in potassium and glutamate homeostasis. PMID:33481774

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  Peptide signaling without feedback in signal production operates as a true quorum sensing communication system in Bacillus subtilis. PMID:33420264

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  A regulatory pathway that selectively up-regulates elongasome function in the absence of class A PBPs. PMID:32897856

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  The roles of replication-transcription conflict in mutagenesis and evolution of genome organization. PMID:32853297

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  Advances on systems metabolic engineering of Bacillus subtilis as a chassis cell. PMID:32775709

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  YjbH Requires Its Thioredoxin Active Motif for the Nitrosative Stress Response, Cell-to-Cell Spread, and Protein-Protein Interactions in Listeria monocytogenes. PMID:32253340

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  Analysis of a bac operon-silenced strain suggests pleiotropic effects of bacilysin in Bacillus subtilis. PMID:31989543

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  Crystal structures of the Bacillus subtilis prophage lytic cassette proteins XepA and YomS. PMID:31692476

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  Determination of the Gene Regulatory Network of a Genome-Reduced Bacterium Highlights Alternative Regulation Independent of Transcription Factors. PMID:31445891

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  Microbial life cycles link global modularity in regulation to mosaic evolution. PMID:31332330

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  Extracytoplasmic Function σ Factors Can Be Implemented as Robust Heterologous Genetic Switches in Bacillus subtilis. PMID:30897511

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  Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions. PMID:30842463

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  Multi-study inference of regulatory networks for more accurate models of gene regulation. PMID:30677040

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  Comparison of Bacillus subtilis transcriptome profiles from two separate missions to the International Space Station. PMID:30623021

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  The DEAD-Box RNA Helicases of Bacillus subtilis as a Model to Evaluate Genetic Compensation Among Duplicate Genes. PMID:30337909

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  Microdomain formation is a general property of bacterial membrane proteins and induces heterogeneity of diffusion patterns. PMID:30173665

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  High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions. PMID:30165663

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  Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39. PMID:30107613

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  Transmating: conjugative transfer of a new broad host range expression vector to various Bacillus species using a single protocol. PMID:29884129

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  Formation of functional, non-amyloidogenic fibres by recombinant Bacillus subtilis TasA. PMID:29802781

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  SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis. PMID:29788229

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  Evolutionary Convergence of Pathway-Specific Enzyme Expression Stoichiometry. PMID:29606352

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  Dual Regulation of Bacillus subtilis kinB Gene Encoding a Sporulation Trigger by SinR through Transcription Repression and Positive Stringent Transcription Control. PMID:29321771

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  Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. PMID:29280348

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  Free SepF interferes with recruitment of late cell division proteins. PMID:29209072

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  LiverWiki: a wiki-based database for human liver. PMID:29029599

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  Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis. PMID:28723971

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  Lysinibacillus fusiformis M5 Induces Increased Complexity in Bacillus subtilis 168 Colony Biofilms via Hypoxanthine. PMID:28583948

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  The Highly Conserved Asp23 Family Protein YqhY Plays a Role in Lipid Biosynthesis in Bacillus subtilis. PMID:28579978

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  Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism. PMID:27965289

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  Identification of Differentially Expressed Genes during Bacillus subtilis Spore Outgrowth in High-Salinity Environments Using RNA Sequencing. PMID:27766092

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  The Blueprint of a Minimal Cell: MiniBacillus. PMID:27681641

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  Second Messenger Signaling in Bacillus subtilis: Accumulation of Cyclic di-AMP Inhibits Biofilm Formation. PMID:27252699

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  Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria. PMID:27242034

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  Impact of Serine/Threonine Protein Kinases on the Regulation of Sporulation in Bacillus subtilis. PMID:27148245

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  Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions. PMID:27035918

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  The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669
• A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki PubMed citations: 21.

  21 articles citing: A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki

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  Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168. PMID:32629984

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  SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis. PMID:29788229

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  Listeriomics: an Interactive Web Platform for Systems Biology of Listeria. PMID:28317029

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  Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity. PMID:27272929

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  Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data. PMID:27047450

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  Reconstruction of gene networks using prior knowledge. PMID:26589494

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  Transcriptional Profile of Bacillus subtilis sigF-Mutant during Vegetative Growth. PMID:26506528

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  SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information. PMID:24178028

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  Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks. PMID:23525069

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  Definition of the σ(W) regulon of Bacillus subtilis in the absence of stress. PMID:23155385

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  BioNLP Shared Task--The Bacteria Track. PMID:22759457

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  Linking genes to diseases with a SNPedia-Gene Wiki mashup. PMID:22541597

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  Comparative analysis of gene content evolution in phytoplasmas and mycoplasmas. PMID:22479625

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  Mining the Gene Wiki for functional genomic knowledge. PMID:22165947

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  GONUTS: the Gene Ontology Normal Usage Tracking System. PMID:22110029

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  SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis. PMID:22096228

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  EcoliWiki: a wiki-based community resource for Escherichia coli. PMID:22064863

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  Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis. PMID:21266987

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  Hierarchical evolution of the bacterial sporulation network. PMID:20833318

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  A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture. PMID:20617312

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  Copper stress affects iron homeostasis by destabilizing iron-sulfur cluster formation in Bacillus subtilis. PMID:20233928
• Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis PubMed citations: 16.

  16 articles citing: Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis

  ×

  SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis. PMID:29788229

  ---

  Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. PMID:29280348

  ---

  Reconstruction of gene networks using prior knowledge. PMID:26589494

  ---

  SubtiWiki 2.0--an integrated database for the model organism Bacillus subtilis. PMID:26433225

  ---

  Metabolic adaptation and protein complexes in prokaryotes. PMID:24957769

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  SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information. PMID:24178028

  ---

  Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks. PMID:23525069

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  Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model. PMID:23109554

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  BioNLP Shared Task--The Bacteria Track. PMID:22759457

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  Global impact of protein arginine phosphorylation on the physiology of Bacillus subtilis. PMID:22517742

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  Comparative analysis of gene content evolution in phytoplasmas and mycoplasmas. PMID:22479625

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  Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation. PMID:22383037

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  SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis. PMID:22096228

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  Regulon of the N-acetylglucosamine utilization regulator NagR in Bacillus subtilis. PMID:21602348

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  Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis. PMID:21266987

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  SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants. PMID:21219666
• The current state of SubtiWiki, the database for the model organism Bacillus subtilis PubMed citations: 5.

  5 articles citing: The current state of SubtiWiki, the database for the model organism Bacillus subtilis

  ×

  Transcriptomic Analysis Reveals the Role of tmRNA on Biofilm Formation in Bacillus subtilis. PMID:35889057

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  Characterization of subtilosin gene in wild type Bacillus spp. and possible physiological role. PMID:35732659

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  Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes. PMID:35638784

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  Constitutive expression of the global regulator AbrB restores the growth defect of a genome-reduced Bacillus subtilis strain and improves its metabolite production. PMID:35608323

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  The Minimal Translation Machinery: What We Can Learn From Naturally and Experimentally Reduced Genomes. PMID:35479634
• http://dx.doi.org/10.1093/nar/gkt1002

Tags:

Tags

More detailed information about this field from each metasource. ×

gene

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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gene expression data

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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genetic interaction

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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molecular interaction

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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plasmid

metasource: Fairsharing.org
version: FAIRsharing.org: SubtiWiki; SubtiWiki; DOI: https://doi.org/10.25504/FAIRsharing.2ck3st; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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genomics databases (non-vertebrate)

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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prokaryotic genome databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

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endocrinology and metabolism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

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phylogenetics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:52.996942

Close

gene gene expression genetic interaction molecular interaction plasmid genomics prokaryotic genome molecular interactions, pathways and networks gene expression model organisms endocrinology and metabolism phylogenetics