RPFdb

RMBase

Database to integrate epitranscriptome sequencing data for exploring post-transcriptionally modifications of RNAs, as well as their relationships with microRNA binding events, disease-related SNPs and ...

short Open Reading Frame database

sORFs.org is a database for sORFs identified using ribosome profiling. Starting from ribosome profiling, sORFs.org identifies sORFs, incorporates state-of-the-art tools and metrics and stores results ...

deepBase

Deep sequencing data from 185 small RNA libraries from diverse tissues and cell lines of seven organisms: human, mouse, chicken, C. intestinalis, D. melanogaster, C. elegans and A. thaliana. It facili ...

ncRPheno

a comprehensive database platform for identification and validation of disease related noncoding RNAs. Mar 26, 2020: ncRPheno was published on the journal of RNA Biology... ncRPheno is a comprehensi ...

Pol3Base

A resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs.

ColorCells

ColorCells is a database of expression, classification and functions of lncRNAs in single cells. Single cell RNA sequencing (scRNA-Seq) technology has revealed significant differences in gene expressi ...

LNCediting

RNA editing sites in lncRNAs from human, monkey, mouse and fly

RNA Modification Database

Naturally modified nucleosides in RNA

RAID

Human RNA-RNA and RNA-protein interactions

DARNED

Database of RNA Editing

GSDB

A database of 3D chromosome and genome structures reconstructed from Hi-C data. Bioinformatics, Data Mining, Machine Learning (BDM) Laboratory,. GSDB : Genome Structure Database.

GWIPS-viz

GWIPS-viz is a freely available on-line genome browser which provides pre-populated ribosome profiling (Ribo-seq) and mRNA-seq tracks from published studies.

MeT-DB

RNA MEthylation by SEquencing databaSe

NRED

Noncoding RNA Expression Database

BPS

Database of RNA Base-Pair Structures

RNA FRABASE

A database of 3D RNA fragments within known RNA structures

StarBASE

microRNA-mRNA interaction maps

RADAR

A Rigorously Annotated Database of A-to-I RNA editing

PolyA_DB