Minimum Information about a Molecular Interaction Experiment
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Minimum Information about a Molecular Interaction Experiment
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
MIMIx
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
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Minimum Information about a Molecular Interaction Experiment
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
MIMIx
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information about a Molecular Interaction Experiment
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
MIMIx
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
MIMIx is a community guideline advising the user on how to fully describe a molecular interaction experiment and which information it is important to capture. The document is designed as a compromise between the necessary depth of information to describe all relevant aspects of the interaction experiment, and the reporting burden placed on the scientist generating the data.
Description
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MIMIx is a community guideline advising the user on how to fully describe a molecular interaction experiment and which information it is important to capture. The document is designed as a compromise between the necessary depth of information to describe all relevant aspects of the interaction experiment, and the reporting burden placed on the scientist generating the data.
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
https://www.psidev.info/mimixWebpage
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https://www.psidev.info/mimix
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
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The minimum information required for reporting a molecular interaction experiment (MIMIx)
PMID: 17687370
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
The minimum information required for reporting a molecular interaction experiment (MIMIx)
PMID: 17687370
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
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The minimum information required for reporting a molecular interaction experiment (MIMIx)
PubMed citations: 109.
109 articles citing: The minimum information required for reporting a molecular interaction experiment (MIMIx)
The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses. PMID:35531299
PSINDB: the postsynaptic protein-protein interaction database. PMID:35234850
The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction. PMID:34789143
MIRRAGGE - Minimum Information Required for Reproducible AGGregation Experiments. PMID:33328883
Towards a unified open access dataset of molecular interactions. PMID:33262342
IHP-PING-generating integrated human protein-protein interaction networks on-the-fly. PMID:33129201
Best Practices for Making Reproducible Biochemical Models. PMID:32853539
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). PMID:32637990
Prediction of the Secretome and the Surfaceome: A Strategy to Decipher the Crosstalk between Adipose Tissue and Muscle during Fetal Growth. PMID:32575512
OPTN recruitment to a Golgi-proximal compartment regulates immune signalling and cytokine secretion. PMID:32376785
Biomarkers of Acute Lung Injury The Individualized Approach: for Phenotyping, Risk Stratification and Treatment Surveillance. PMID:31382587
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination. PMID:30793173
MatrixDB: integration of new data with a focus on glycosaminoglycan interactions. PMID:30371822
JAMI: a Java library for molecular interactions and data interoperability. PMID:29642846
Is systems pharmacology ready to impact upon therapy development? A study on the cholesterol biosynthesis pathway. PMID:28910500
Protein Bioinformatics Databases and Resources. PMID:28150231
Glycosaminoglycanomics: where we are. PMID:27900575
HPIDB 2.0: a curated database for host-pathogen interactions. PMID:27374121
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks. PMID:27131791
Using biological networks to integrate, visualize and analyze genomics data. PMID:27036106
Fundamentals of protein interaction network mapping. PMID:26681426
Application of Functional Genomics for Bovine Respiratory Disease Diagnostics. PMID:26526746
Detecting modules in biological networks by edge weight clustering and entropy significance. PMID:26379697
Data integration in biological research: an overview. PMID:26336651
CellWhere: graphical display of interaction networks organized on subcellular localizations. PMID:25883154
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. PMID:25652942
A visual review of the interactome of LRRK2: Using deep-curated molecular interaction data to represent biology. PMID:25648416
Quality assessment and optimization of purified protein samples: why and how? PMID:25547134
MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities. PMID:25378329
Functional and genomic context in pathway analysis of GWAS data. PMID:25154796
The human plasma membrane peripherome: visualization and analysis of interactions. PMID:25057483
Relation of completeness of reporting of health research to journals' endorsement of reporting guidelines: systematic review. PMID:24965222
Guidelines for managing data and processes in bone and cartilage tissue engineering. PMID:24564199
Computational Prediction of Protein-Protein Interaction Networks: Algo-rithms and Resources. PMID:24396273
Proteomics quality and standard: from a regulatory perspective. PMID:24316359
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. PMID:24234451
Capturing cooperative interactions with the PSI-MI format. PMID:24067240
A new reference implementation of the PSICQUIC web service. PMID:23671334
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. PMID:23599424
Interactome3D: adding structural details to protein networks. PMID:23399932
A semantic proteomics dashboard (SemPoD) for data management in translational research. PMID:23282161
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation. PMID:23180781
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097
Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data. PMID:22948730
Analyzing protein-protein interactions from affinity purification-mass spectrometry data with SAINT. PMID:22948729
Minireview: progress and challenges in proteomics data management, sharing, and integration. PMID:22902541
DIPSBC--data integration platform for systems biology collaborations. PMID:22568834
Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets. PMID:22482945
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. PMID:22453911
The mzIdentML data standard for mass spectrometry-based proteomics results. PMID:22375074
Guidelines for information about therapy experiments: a proposal on best practice for recording experimental data on cancer therapy. PMID:22226027
Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases. PMID:22151178
The IntAct molecular interaction database in 2012. PMID:22121220
MINT, the molecular interaction database: 2012 update. PMID:22096227
Enabling BioSharing - a report on the Annual Spring Workshop of the HUPO-PSI April 11-13, 2011, EMBL-Heidelberg, Germany. PMID:22045680
Minimum information about a bioactive entity (MIABE). PMID:21878981
Approaches for the study of cancer: towards the integration of genomics, proteomics and metabolomics. PMID:21865133
Visualization and biochemical analyses of the emerging mammalian 14-3-3-phosphoproteome. PMID:21725060
A DIGE study on the effects of salbutamol on the rat muscle proteome - an exemplar of best practice for data sharing in proteomics. PMID:21443781
Knowledge management for systems biology a general and visually driven framework applied to translational medicine. PMID:21375767
Data standards for Omics data: the basis of data sharing and reuse. PMID:21370078
Mass spectrometry-based immuno-precipitation proteomics - the user's guide. PMID:21365760
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. PMID:21304730
The Biomolecular Interaction Network Database in PSI-MI 2.5. PMID:21233089
Literature curation of protein interactions: measuring agreement across major public databases. PMID:21183497
BISC: binary subcomplexes in proteins database. PMID:21081561
The BioGRID Interaction Database: 2011 update. PMID:21071413
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. PMID:21036869
ProHits: integrated software for mass spectrometry-based interaction proteomics. PMID:20944583
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence. PMID:20940177
MatrixDB, the extracellular matrix interaction database. PMID:20852260
The FEBS Letters/BioCreative II.5 experiment: making biological information accessible. PMID:20829821
Curating the innate immunity interactome. PMID:20727158
The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative. PMID:20677327
Minimum information about a protein affinity reagent (MIAPAR). PMID:20622827
Protein-protein interactions essentials: key concepts to building and analyzing interactome networks. PMID:20589078
Getting a grip on complexes. PMID:20514218
BioTorrents: a file sharing service for scientific data. PMID:20418944
Bioinformatics and molecular modeling in glycobiology. PMID:20364395
From evidence to inference: probing the evolution of protein interaction networks. PMID:20357887
A gene-centric human proteome project: HUPO--the Human Proteome organization. PMID:20124355
From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase. PMID:20043185
The European Bioinformatics Institute's data resources. PMID:19934258
MINT, the molecular interaction database: 2009 update. PMID:19897547
pISTil: a pipeline for yeast two-hybrid Interaction Sequence Tags identification and analysis. PMID:19874608
The IntAct molecular interaction database in 2010. PMID:19850723
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. PMID:19841731
Tumor suppressor density-enhanced phosphatase-1 (DEP-1) inhibits the RAS pathway by direct dephosphorylation of ERK1/2 kinases. PMID:19494114
Nucleoside diphosphate kinase (NDPK, NM23, AWD): recent regulatory advances in endocytosis, metastasis, psoriasis, insulin release, fetal erythroid lineage and heart failure; translational medicine exemplified. PMID:19415463
A general pipeline for quality and statistical assessment of protein interaction data using R and Bioconductor. PMID:19325550
Mostly, your results matter to others. PMID:19174831
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions. PMID:19147664
Literature-curated protein interaction datasets. PMID:19116613
VirusMINT: a viral protein interaction database. PMID:18974184
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data. PMID:18834496
Overview of the protein-protein interaction annotation extraction task of BioCreative II. PMID:18834495
iRefIndex: a consolidated protein interaction database with provenance. PMID:18823568
Integrating and annotating the interactome using the MiMI plugin for cytoscape. PMID:18812364
Big data: The future of biocuration. PMID:18769432
InnateDB: facilitating systems-level analyses of the mammalian innate immune response. PMID:18766178
Short time-series microarray analysis: methods and challenges. PMID:18605994
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. PMID:18467421
Making a new technology work: the standardization and regulation of microarrays. PMID:18449388
Steps towards a repertoire of comprehensive maps of human protein interaction networks: the Human Proteotheque Initiative (HuPI). PMID:18443628
Bioinformatics and cancer research: building bridges for translational research. PMID:18258507
The BioGRID Interaction Database: 2008 update. PMID:18000002
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. PMID:17925023
IntAct--open source resource for molecular interaction data. PMID:17145710
Tags:
Tags
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assay
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
chemical entity
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
interactome
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
lipid
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
assay
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
chemical entity
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
interactome
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
lipid
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: MIMIx; Minimum Information about a Molecular Interaction Experiment; DOI: https://doi.org/10.25504/FAIRsharing.8z3xzh; Last edited: March 29, 2021, 11:10 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
assay chemical entity dna interactome lipid molecular interaction protein
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