Genomedata
Genomedata is a format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. We have also developed utilities to load data into this format. A reference implementation in Python and C components is available here under the GNU General Public License.
Description
More detailed information about this field from each metasource.
Genomedata is a format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. We have also developed utilities to load data into this format. A reference implementation in Python and C components is available here under the GNU General Public License.
metasource: Fairsharing.orgversion: FAIRsharing.org: Genomedata; Genomedata; DOI: https://doi.org/10.25504/FAIRsharing.LKgRmR; Last edited: Jan. 25, 2021, 4:29 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Webpage:
https://genomedata.hoffmanlab.org/Webpage
More detailed information about this field from each metasource.
https://genomedata.hoffmanlab.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: Genomedata; Genomedata; DOI: https://doi.org/10.25504/FAIRsharing.LKgRmR; Last edited: Jan. 25, 2021, 4:29 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Genomedata format for storing large-scale functional genomics data
PMID: 20435580
metasource: Fairsharing.org
version: FAIRsharing.org: Genomedata; Genomedata; DOI: https://doi.org/10.25504/FAIRsharing.LKgRmR; Last edited: Jan. 25, 2021, 4:29 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications
More detailed information about this field from each metasource.
The Genomedata format for storing large-scale functional genomics data
PMID: 20435580
metasource: Fairsharing.org
version: FAIRsharing.org: Genomedata; Genomedata; DOI: https://doi.org/10.25504/FAIRsharing.LKgRmR; Last edited: Jan. 25, 2021, 4:29 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
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The Genomedata format for storing large-scale functional genomics data
PubMed citations: 10.
10 articles citing: The Genomedata format for storing large-scale functional genomics data
Continuous chromatin state feature annotation of the human epigenome. PMID:35451453
BD5: An open HDF5-based data format to represent quantitative biological dynamics data. PMID:32785254
Benchmarking database systems for Genomic Selection implementation. PMID:31508797
Set2 methyltransferase facilitates cell cycle progression by maintaining transcriptional fidelity. PMID:29294086
Genome contact map explorer: a platform for the comparison, interactive visualization and analysis of genome contact maps. PMID:28973466
eRFSVM: a hybrid classifier to predict enhancers-integrating random forests with support vector machines. PMID:28096768
metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA. PMID:25063299
Unsupervised pattern discovery in human chromatin structure through genomic segmentation. PMID:22426492
Identifying elemental genomic track types and representing them uniformly. PMID:22208806
Exploratory analysis of genomic segmentations with Segtools. PMID:22029426
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