Evolutionary Trace
Relative evolutionary importance of amino acids within a protein sequence.
Description
More detailed information about this field from each metasource.
Relative evolutionary importance of amino acids within a protein sequence.
metasource: Fairsharing.orgversion: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
http://mammoth.bcm.tmc.edu/ETserver.htmlWebpage
More detailed information about this field from each metasource.
http://mammoth.bcm.tmc.edu/ETserver.html
metasource: Fairsharing.orgversion: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Evolutionary trace for prediction and redesign of protein functional sites
PMID: 22183528
metasource: Fairsharing.org
version: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
Evolutionary trace for prediction and redesign of protein functional sites
PMID: 22183528
metasource: Fairsharing.org
version: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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Evolutionary trace for prediction and redesign of protein functional sites
PubMed citations: 36.
36 articles citing: Evolutionary trace for prediction and redesign of protein functional sites
Functional Classification and Characterization of the Fungal Glycoside Hydrolase 28 Protein Family. PMID:35330219
Draft Genome Assembly and Annotation for Cutaneotrichosporon dermatis NICC30027, an Oleaginous Yeast Capable of Simultaneous Glucose and Xylose Assimilation. PMID:35291590
The Functional Differences between the GroEL Chaperonin of Escherichia coli and the HtpB Chaperonin of Legionella pneumophila Can Be Mapped to Specific Amino Acid Residues. PMID:35053207
Extracting phylogenetic dimensions of coevolution reveals hidden functional signals. PMID:35039514
The role of junctophilin proteins in cellular function. PMID:35001666
Decoding Cancer Variants of Unknown Significance for Helicase-Nuclease-RPA Complexes Orchestrating DNA Repair During Transcription and Replication. PMID:34966786
Expression and Refolding of the Plant Chitinase From Drosera capensis for Applications as a Sustainable and Integrated Pest Management. PMID:34621729
DING Proteins Extend to the Extremophilic World. PMID:33670786
CATH functional families predict functional sites in proteins. PMID:33135053
Evolutionary History of Alzheimer Disease-Causing Protein Family Presenilins with Pathological Implications. PMID:33001284
Sequence-structure-function relationships in class I MHC: A local frustration perspective. PMID:32421728
An Evolutionary Trace method defines functionally important bases and sites common to RNA families. PMID:32208421
Deep Analysis of Residue Constraints (DARC): identifying determinants of protein functional specificity. PMID:32015389
Conformational States of Exchange Protein Directly Activated by cAMP (EPAC1) Revealed by Ensemble Modeling and Integrative Structural Biology. PMID:31877746
Split intein-mediated selection of cells containing two plasmids using a single antibiotic. PMID:31672972
Accelerating structure-function mapping using the ViVa webtool to mine natural variation. PMID:31372596
Evolutionary Stability of Salt Bridges Hints Its Contribution to Stability of Proteins. PMID:31333816
Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs. PMID:30496278
Sequence-based prediction of physicochemical interactions at protein functional sites using a function-and-interaction-annotated domain profile database. PMID:29859055
Inferring joint sequence-structural determinants of protein functional specificity. PMID:29336305
Predicting phenotype from genotype: Improving accuracy through more robust experimental and computational modeling. PMID:28230923
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations. PMID:28002465
HUMAN KINASES DISPLAY MUTATIONAL HOTSPOTS AT COGNATE POSITIONS WITHIN CANCER. PMID:27896994
Protein stabilization improves STAT3 function in autosomal dominant hyper-IgE syndrome. PMID:27799162
UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures. PMID:26590254
Accurate Prediction of Docked Protein Structure Similarity. PMID:26335807
Assessing the genetic diversity of Cu resistance in mine tailings through high-throughput recovery of full-length copA genes. PMID:26286020
Elucidation of G-protein and β-arrestin functional selectivity at the dopamine D2 receptor. PMID:25964346
Algorithmic approaches to protein-protein interaction site prediction. PMID:25713596
Structural basis for misfolding in myocilin-associated glaucoma. PMID:25524706
Prediction and redesign of protein-protein interactions. PMID:24878423
Differential effects of collagen prolyl 3-hydroxylation on skeletal tissues. PMID:24465224
Regulation of Ras localization and cell transformation by evolutionarily conserved palmitoyltransferases. PMID:24248599
Function prediction from networks of local evolutionary similarity in protein structure. PMID:23514548
Are predicted protein structures of any value for binding site prediction and virtual ligand screening? PMID:23415854
Simplifying complex sequence information: a PCP-consensus protein binds antibodies against all four Dengue serotypes. PMID:22863657
Tags:
Tags
More detailed information about this field from each metasource.
evolution
metasource: Fairsharing.org
version: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
evolution
metasource: Fairsharing.orgversion: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: Evolutionary Trace; Evolutionary Trace; DOI: https://doi.org/10.25504/FAIRsharing.4eanvm; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
evolution protein polypeptide region
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