DataMed
DataMed is a prototype biomedical data search engine. Its goal is to discover data sets across data repositories or data aggregators. In the future it will allow searching outside these boundaries. DataMed supports the NIH-endorsed FAIR principles of Findability, Accessibility, Interoperability and Reusability of datasets with current functionality assisting in finding datasets and providing access information about them. The data repositories covered in this initial release have been selected by the bioCADDIE team and represent only a small sample of biomedical data. DataMed indexes the core metadata available for most datasets, but it offers enhanced search functions when repositories provide additional metadata.
Description
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DataMed is a prototype biomedical data search engine. Its goal is to discover data sets across data repositories or data aggregators. In the future it will allow searching outside these boundaries. DataMed supports the NIH-endorsed FAIR principles of Findability, Accessibility, Interoperability and Reusability of datasets with current functionality assisting in finding datasets and providing access information about them. The data repositories covered in this initial release have been selected by the bioCADDIE team and represent only a small sample of biomedical data. DataMed indexes the core metadata available for most datasets, but it offers enhanced search functions when repositories provide additional metadata.
metasource: Fairsharing.orgversion: FAIRsharing.org: DataMed; DataMed; DOI: https://doi.org/10.25504/FAIRsharing.v5q4zc; Last edited: March 8, 2021, 11:41 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Webpage:
https://datamed.orgWebpage
More detailed information about this field from each metasource.
https://datamed.org
metasource: Fairsharing.orgversion: FAIRsharing.org: DataMed; DataMed; DOI: https://doi.org/10.25504/FAIRsharing.v5q4zc; Last edited: March 8, 2021, 11:41 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
DataMed - an open source discovery index for finding biomedical datasets
PMID: 29346583
metasource: Fairsharing.org
version: FAIRsharing.org: DataMed; DataMed; DOI: https://doi.org/10.25504/FAIRsharing.v5q4zc; Last edited: March 8, 2021, 11:41 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
DataMed - an open source discovery index for finding biomedical datasets
PMID: 29346583
metasource: Fairsharing.org
version: FAIRsharing.org: DataMed; DataMed; DOI: https://doi.org/10.25504/FAIRsharing.v5q4zc; Last edited: March 8, 2021, 11:41 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
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DataMed - an open source discovery index for finding biomedical datasets
PubMed citations: 10.
10 articles citing: DataMed - an open source discovery index for finding biomedical datasets
ImmuneData: an integrated data discovery system for immunology data repositories. PMID:35262674
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability. PMID:34846691
Mining news media for understanding public health concerns. PMID:33948233
"When they say weed causes depression, but it's your fav antidepressant": Knowledge-aware attention framework for relationship extraction. PMID:33764983
An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries. PMID:33247935
A content-based dataset recommendation system for researchers-a case study on Gene Expression Omnibus (GEO) repository. PMID:33002137
The Data Tags Suite (DATS) model for discovering data access and use requirements. PMID:32031623
The Integrated Resource for Reproducibility in Macromolecular Crystallography: Experiences of the first four years. PMID:31768399
A data citation roadmap for scholarly data repositories. PMID:30971690
Mining data and metadata from the gene expression omnibus. PMID:30594974
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fair
metasource: Fairsharing.org
version: FAIRsharing.org: DataMed; DataMed; DOI: https://doi.org/10.25504/FAIRsharing.v5q4zc; Last edited: March 8, 2021, 11:41 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Tags
More detailed information about this field from each metasource.
fair
metasource: Fairsharing.orgversion: FAIRsharing.org: DataMed; DataMed; DOI: https://doi.org/10.25504/FAIRsharing.v5q4zc; Last edited: March 8, 2021, 11:41 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
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