Darwin Core
Names
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Darwin Core
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
DwC
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Darwin Core
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
DwC
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Darwin Core
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
DwC
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Darwin Core (DwC) is a vocabulary that includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to facilitate the sharing of information about biological diversity by providing identifiers, labels, and definitions. The Darwin Core is primarily based on the observation, specimen and samples of taxa. The Darwin Core standard is comprised of one vocabulary (the Darwin Core vocabulary), and six associated documents. The vocabulary itself is composed of four term lists: Darwin Core terms borrowed from the Dublin Core legacy and terms namespace, Darwin Core IRI-value Term Analogs, and the core terms defined by Darwin Core.
Description
More detailed information about this field from each metasource.
Darwin Core (DwC) is a vocabulary that includes a glossary of terms (in other contexts these might be called properties, elements, fields, columns, attributes, or concepts) intended to facilitate the sharing of information about biological diversity by providing identifiers, labels, and definitions. The Darwin Core is primarily based on the observation, specimen and samples of taxa. The Darwin Core standard is comprised of one vocabulary (the Darwin Core vocabulary), and six associated documents. The vocabulary itself is composed of four term lists: Darwin Core terms borrowed from the Dublin Core legacy and terms namespace, Darwin Core IRI-value Term Analogs, and the core terms defined by Darwin Core.
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
http://www.tdwg.org/standards/450Webpage
More detailed information about this field from each metasource.
http://www.tdwg.org/standards/450
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence:
Name: Creative Commons Attribution 3.0 United States (CC BY 3.0 US)Licence name
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Creative Commons Attribution 3.0 United States (CC BY 3.0 US)
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/3.0/us/
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Darwin Core: an evolving community-developed biodiversity data standard
PMID: 22238640
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet
PMID: 25099149
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Linking multiple biodiversity informatics platforms with Darwin Core Archives
PMID: 24723785
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
Darwin Core: an evolving community-developed biodiversity data standard
PMID: 22238640
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet
PMID: 25099149
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Linking multiple biodiversity informatics platforms with Darwin Core Archives
PMID: 24723785
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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Darwin Core: an evolving community-developed biodiversity data standard
PubMed citations: 202.
202 articles citing: Darwin Core: an evolving community-developed biodiversity data standard
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods. PMID:35852418
European primary datasets of alien bacteria and viruses. PMID:35831307
Country Compendium of the Global Register of Introduced and Invasive Species. PMID:35810161
Data standardization of plant-pollinator interactions. PMID:35639882
Bridging the Research Gap between Live Collections in Zoos and Preserved Collections in Natural History Museums. PMID:35592056
Past and future uses of text mining in ecology and evolution. PMID:35582795
Vascular plants occurrences in the Southern Urals industrial towns (Sterlitamak and Salavat). PMID:35437415
Toward an atlas of Salish Sea biodiversity: the flora and fauna of Galiano Island, British Columbia, Canada. Part I. Marine zoology. PMID:35437414
Fine-scale abundance of rocky shore macroalgae species with distribution limits in NW Iberia in 2020/2021. PMID:35437402
Geohistorical dataset of ten plant species introduced into Occitania (France). PMID:35437401
SISS-Geo: Leveraging Citizen Science to Monitor Wildlife Health Risks in Brazil. PMID:35415433
CEBA: A Data Lake for Data Sharing and Environmental Monitoring. PMID:35408347
A comprehensive catalogue of plant-pollinator interactions for Chile. PMID:35277531
Aggregated occurrence records of invasive European frog-bit (Hydrocharismorsus-ranae L.) across North America. PMID:35210916
Allometric relationships of ecologically important Antarctic and Arctic zooplankton and fish species. PMID:35210695
A new phylogenetic data standard for computable clade definitions: the Phyloreference Exchange Format (Phyx). PMID:35186448
A database of common vampire bat reports. PMID:35173163
Biodiversity of macrophyte communities and associated aquatic organisms in lakes of the Vologda Region (north-western Russia). PMID:35095298
Plant occurrences on the Rybachy and the Sredny Peninsulas, Murmansk Region, Russia: a dataset. PMID:35068980
Ecological data in Darwin Core: the case of earthworm surveys. PMID:34924798
Macrophyte diversity in rivers and streams of the Vologda Region and several other regions of Russia. PMID:34916872
A botanical demonstration of the potential of linking data using unique identifiers for people. PMID:34905557
Biodiversity of a boreal mire, including its hydrographic network (Shichengskoe mire, north-western Russia). PMID:34866965
Pteridophyte distribution of the Urals and adjacent areas: a dataset. PMID:34866963
Ru-Birds.RU, bird observations from Russia and neighbouring regions: an occurrence dataset. PMID:34866962
GenBank. PMID:34850943
The extremely high diversity of Collembola in relict forests of Primorskii Krai of Russia. PMID:34849081
Adding pieces to the puzzle: insights into diversity and distribution patterns of Cumacea (Crustacea: Peracarida) from the deep North Atlantic to the Arctic Ocean. PMID:34824910
Distribution and species composition of zooplankton (rotifers and crustaceans) in the Basin of the Middle Volga River, Russia. PMID:34795551
BEXIS2: A FAIR-aligned data management system for biodiversity, ecology and environmental data. PMID:34785977
Occurrence of the birds of the Middle Volga Region (South-East of the European part of Russia). PMID:34776734
Open Data Practices among Users of Primary Biodiversity Data. PMID:34733117
Towards a Post-Graduate Level Curriculum for Biodiversity Informatics. Perspectives from the Global Biodiversity Information Facility (GBIF) Community. PMID:34720633
Tracking, Synthesizing, and Sharing Global Batrachochytrium Data at AmphibianDisease.org. PMID:34692807
Infrastructure and Population of the OpenBiodiv Biodiversity Knowledge Graph. PMID:34690512
Moss occurrences in Salair-Kuznetsk Region (Altai-Sayan mountain country). PMID:34616217
Catalogue of Rose Gall, Herb Gall, and Inquiline Gall Wasps (Hymenoptera: Cynipidae) of the United States, Canada and Mexico. PMID:34539199
Global Commitments to Conserving and Monitoring Genetic Diversity Are Now Necessary and Feasible. PMID:34475806
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe Archipelago, based on citizen science. PMID:34393586
Citizen science and online data: Opportunities and challenges for snake ecology and action against snakebite. PMID:34278294
Occurrence data for the two cryptic species of Cacopsylla pruni (Hemiptera: Psylloidea). PMID:34267597
Aggregated occurrence records of the invasive alien striped field mouse (Apodemus agrarius Pall.) in the former USSR. PMID:34239342
Holistic understanding of contemporary ecosystems requires integration of data on domesticated, captive and cultivated organisms. PMID:34168517
Occurrence of fish species in the inland water of Murmansk Region (Russia): research in 1972-2021. PMID:34104063
Leveraging natural history biorepositories as a global, decentralized, pathogen surveillance network. PMID:34081744
A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers. PMID:33983435
The Atlas of Living Australia: History, current state and future directions. PMID:33935559
Next-generation field courses: Integrating Open Science and online learning. PMID:33898010
Decentralized but Globally Coordinated Biodiversity Data. PMID:33693407
PsyCuraDat: Designing a User-Oriented Curation Standard for Behavioral Psychological Research Data. PMID:33584413
Data integration enables global biodiversity synthesis. PMID:33526679
Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis. PMID:33432777
Importance of building a digital species index (spindex) for entomology collections: A case study, results and recommendations. PMID:33390759
The Taxon Hypothesis Paradigm-On the Unambiguous Detection and Communication of Taxa. PMID:33266327
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
Distribution of alien plant species of the Middle Volga Region (South-East of the European part of Russia): a dataset. PMID:33223917
New records of the land and freshwater molluscs of Gran Canaria (Canary Islands, Spain). PMID:33223872
Diversity of Collembola under various types of anthropogenic load on ecosystems of European part of Russia. PMID:33204207
Reptile occurrences data in the Volga River basin (Russia). PMID:33204206
A database of weed plants in the European part of Russia. PMID:33192154
Biodiversidata: A novel dataset for the vascular plant species diversity in Uruguay. PMID:33192152
A checklist recipe: making species data open and FAIR. PMID:33181821
Molecular Detection Mapping and Analysis Platform for R (MDMAPR) facilitating the standardization, analysis, visualization, and sharing of qPCR data and metadata. PMID:33150057
Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data. PMID:33076428
Benthic Peracarids (Crustacea) from an unexplored area of Patagonian channels and Fjords. PMID:33061780
Distributional records of Ross Sea (Antarctica) planktic Copepoda from bibliographic data and samples curated at the Italian National Antarctic Museum (MNA): checklist of species collected in the Ross Sea sector from 1987 to 1995. PMID:33013165
Diversity of benthic marine mollusks of the Strait of Magellan, Chile (Polyplacophora, Gastropoda, Bivalvia): a historical review of natural history. PMID:32922129
"METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive". PMID:32883210
Standardisation of bioacoustic terminology for insects. PMID:32848502
Document or Lose It-On the Importance of Information Management for Genetic Resources Conservation in Genebanks. PMID:32824806
A novel curation system to facilitate data integration across regional citizen science survey programs. PMID:32821528
Characterization of deep-sea benthic invertebrate megafauna of the Galapagos Islands. PMID:32807819
Long-term monitoring of the Iberian ibex population in the Sierra Nevada of the southeast Iberian Peninsula. PMID:32587252
Biologer: an open platform for collecting biodiversity data. PMID:32581636
Repositories for Taxonomic Data: Where We Are and What is Missing. PMID:32298457
A fine-tuned global distribution dataset of marine forests. PMID:32286314
A database of the global distribution of alien macrofungi. PMID:32280297
Towards a catalogue of biodiversity databases: An ontological case study. PMID:32269475
The Maya Preclassic to Classic transition observed through faunal trends from Ceibal, Guatemala. PMID:32255773
Watervogels - Wintering waterbirds in Flanders, Belgium. PMID:32148427
New perspectives on analysing data from biological collections based on social network analytics. PMID:32098973
Open Science principles for accelerating trait-based science across the Tree of Life. PMID:32066887
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data. PMID:32053657
Ewé: a web-based ethnobotanical database for storing and analysing data. PMID:32052012
A new model for efficient, need-driven progress in generating primary biodiversity information resources. PMID:31993260
Harvestmen occurrence database (Arachnida, Opiliones) of the Museu Paraense Emílio Goeldi, Brazil. PMID:31942161
A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses. PMID:31891586
A data management workflow of biodiversity data from the field to data users. PMID:31890356
Improved standardization of transcribed digital specimen data. PMID:31819990
A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples. PMID:31811161
The commonness of rarity: Global and future distribution of rarity across land plants. PMID:31807712
Eyasi Plateau Paleontological Expedition, Laetoli, Tanzania, fossil specimen database 1998-2005. PMID:31796753
A deafening silence: a lack of data and reproducibility in published bioacoustics research? PMID:31723333
A checklist for maximizing reproducibility of ecological niche models. PMID:31548646
Global distribution and diversity of Chaetoceros (Bacillariophyta, Mediophyceae): integration of classical and novel strategies. PMID:31489261
A born-digital field-to-database solution for collections-based research using collNotes and collBook. PMID:31467807
Rescuing Troves of Hidden Ecological Data to Tackle Emerging Mosquito-Borne Diseases. PMID:31442186
Modeling Crop Genetic Resources Phenotyping Information Systems. PMID:31281323
Biodiversidata: An Open-Access Biodiversity Database for Uruguay. PMID:31274982
Dataset of occurrence and incidence of pine processionary moth in Andalusia, south Spain. PMID:31210747
Dataset from the Snakes (Serpentes, Reptiles) collection of the Museu Paraense Emílio Goeldi, Pará, Brazil. PMID:31086477
Moss occurrences in Yugyd Va National Park, Subpolar and Northern Urals, European North-East Russia. PMID:31048980
MIReAD, a minimum information standard for reporting arthropod abundance data. PMID:31024009
Data gaps and opportunities for comparative and conservation biology. PMID:31004061
Ozymandias: a biodiversity knowledge graph. PMID:30993051
The Natural History Museum Data Portal. PMID:30985890
ZooArchNet: Connecting zooarchaeological specimens to the biodiversity and archaeology data networks. PMID:30978247
Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. PMID:30918448
Biodiversity data integration-the significance of data resolution and domain. PMID:30883539
Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research. PMID:30715273
COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature. PMID:30700967
iNaturalist as a tool to expand the research value of museum specimens. PMID:30473939
A story of data won, data lost and data re-found: the realities of ecological data preservation. PMID:30473618
Raritas: a program for counting high diversity categorical data with highly unequal abundances. PMID:30324008
Aggregated occurrence records of the federally endangered Poweshiek skipperling (Oarisma poweshiek). PMID:30305800
Toward a service-based workflow for automated information extraction from herbarium specimens. PMID:30295725
Togo National Herbarium database. PMID:30275736
Tapping into technology and the biodiversity informatics revolution: updated terrestrial mammal list of Angola, with new records from the Okavango Basin. PMID:30108429
Liberating links between datasets using lightweight data publishing: an example using plant names and the taxonomic literature. PMID:30065607
Georeferenced sighting and specimen occurrence data of the extinct Carolina Parakeet (Conuropsis carolinensis) from 1564 - 1944. PMID:29955216
An updated checklist of the Tenebrionidae sec. Bousquet et al. 2018 of the Algodones Dunes of California, with comments on checklist data practices. PMID:29942173
The inland water macro-invertebrate occurrences in Flanders, Belgium. PMID:29861649
The taxlist package: managing plant taxonomic lists in R. PMID:29750074
Use of globally unique identifiers (GUIDs) to link herbarium specimen records to physical specimens. PMID:29732258
Herbarium data: Global biodiversity and societal botanical needs for novel research. PMID:29732255
Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants. PMID:29732253
An audit of some processing effects in aggregated occurrence records. PMID:29713234
The NCBI BioCollections Database. PMID:29688360
Automated plant species identification-Trends and future directions. PMID:29621236
Fishes of the Cusiana River (Meta River basin, Colombia), with an identification key to its species. PMID:29416408
Introducing the Global Register of Introduced and Invasive Species. PMID:29360103
OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system. PMID:29347997
To increase trust, change the social design behind aggregated biodiversity data. PMID:29315357
No general relationship between mass and temperature in endothermic species. PMID:29313491
Abundance indices and biological traits of juvenile salmon (Salmo salar) sampled in three rivers on the Atlantic and Channel coasts (France). PMID:29308041
Data from the ichthyological collection of the Museu Paraense Emílio Goeldi. PMID:29114167
Essential Annotation Schema for Ecology (EASE)-A framework supporting the efficient data annotation and faceted navigation in ecology. PMID:29023519
Fish Ontology framework for taxonomy-based fish recognition. PMID:28929028
Temporal degradation of data limits biodiversity research. PMID:28904766
Dataset of herbarium specimens of threatened vascular plants in Catalonia. PMID:28814919
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples. PMID:28771471
A review of the Cercyon Leach (Coleoptera, Hydrophilidae, Sphaeridiinae) of the Greater Antilles. PMID:28769720
Automated assembly of a reference taxonomy for phylogenetic data synthesis. PMID:28765728
Comparison of Herbarium Label Data and Published Medicinal Use: Herbaria as an Underutilized Source of Ethnobotanical Information. PMID:28496281
A distribution and taxonomic reference dataset of Geranium in the New World. PMID:28398302
AnnoSys-implementation of a generic annotation system for schema-based data using the example of biodiversity collection data. PMID:28365735
Actionable, long-term stable and semantic web compatible identifiers for access to biological collection objects. PMID:28365724
Toward a new data standard for combined marine biological and environmental datasets - expanding OBIS beyond species occurrences. PMID:28325978
Three new species of entimine weevils in Early Miocene amber from the Dominican Republic (Coleoptera: Curculionidae). PMID:28325975
RAINBIO: a mega-database of tropical African vascular plants distributions. PMID:28127234
The importance of digitized biocollections as a source of trait data and a new VertNet resource. PMID:28025346
India Biodiversity Portal: An integrated, interactive and participatory biodiversity informatics platform. PMID:27932923
Taxonaut: an application software for comparative display of multiple taxonomies with a use case of GBIF Species API. PMID:27932916
The Global Genome Biodiversity Network (GGBN) Data Standard specification. PMID:27694206
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. PMID:27664130
Biodiversity analysis in the digital era. PMID:27481789
Global Genome Biodiversity Network: saving a blueprint of the Tree of Life - a botanical perspective. PMID:27328683
A database on the distribution of butterflies (Lepidoptera) in northern Belgium (Flanders and the Brussels Capital Region). PMID:27199606
The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research. PMID:27099553
Two Influential Primate Classifications Logically Aligned. PMID:27009895
Location of plant species in Norway gathered as a part of a survey vegetation mapping programme. PMID:26958614
An online taxonomic database of the stick insect (Phasmida) egg-parasitising subfamilies Amiseginae and Loboscelidiinae (Hymenoptera: Chrysididae). PMID:26929715
JellyWeb: an interactive information system on Scyphozoa, Cubozoa and Staurozoa. PMID:26877677
Dataset of Passerine bird communities in a Mediterranean high mountain (Sierra Nevada, Spain). PMID:26865820
The geospatial data quality REST API for primary biodiversity data. PMID:26833340
"Life in Data"--Outcome of a Multi-Disciplinary, Interactive Biobanking Conference Session on Sample Data. PMID:26808538
A geographic distribution database of the Neotropical cassava whitefly complex (Hemiptera, Aleyrodidae) and their associated parasitoids and hyperparasitoids (Hymenoptera). PMID:26798295
A Standardized Reference Data Set for Vertebrate Taxon Name Resolution. PMID:26760296
Inselect: Automating the Digitization of Natural History Collections. PMID:26599208
B-HIT - A Tool for Harvesting and Indexing Biodiversity Data. PMID:26544980
Dataset of MIGRAME Project (Global Change, Altitudinal Range Shift and Colonization of Degraded Habitats in Mediterranean Mountains). PMID:26491387
Standardizing metadata and taxonomic identification in metabarcoding studies. PMID:26236474
Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. PMID:26203332
BioAcoustica: a free and open repository and analysis platform for bioacoustics. PMID:26055102
Making species checklists understandable to machines - a shift from relational databases to ontologies. PMID:25937880
Community next steps for making globally unique identifiers work for biocollections data. PMID:25901117
Dataset of Phenology of Mediterranean high-mountain meadows flora (Sierra Nevada, Spain). PMID:25878552
VIS - A database on the distribution of fishes in inland and estuarine waters in Flanders, Belgium. PMID:25685001
Corrected data re-harvested: curating literature in the era of networked biodiversity informatics. PMID:25632264
Fishing for data and sorting the catch: assessing the data quality, completeness and fitness for use of data in marine biogeographic databases. PMID:25632106
The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices. PMID:25470125
The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet. PMID:25099149
The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web. PMID:25073721
Avibase - a database system for managing and organizing taxonomic concepts. PMID:25061375
Symbiota - A virtual platform for creating voucher-based biodiversity information communities. PMID:25057252
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. PMID:24980130
A geographic distribution database of Mononychellus mites (Acari, Tetranychidae) on cassava (Manihot esculenta). PMID:24899828
The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth. PMID:24891832
Linking multiple biodiversity informatics platforms with Darwin Core Archives. PMID:24723785
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. PMID:24595056
Knowledge extraction and semantic annotation of text from the encyclopedia of life. PMID:24594988
Semantic annotation of mutable data. PMID:24223697
The Global Genome Biodiversity Network (GGBN) Data Portal. PMID:24137012
Clarifying concepts and terms in biodiversity informatics. PMID:23991264
A decadal view of biodiversity informatics: challenges and priorities. PMID:23587026
From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks. PMID:22859891
The notes from nature tool for unlocking biodiversity records from museum records through citizen science. PMID:22859890
The development of a digitising service centre for natural history collections. PMID:22859879
Mass digitization of scientific collections: New opportunities to transform the use of biological specimens and underwrite biodiversity science. PMID:22859875
TOLKIN--Tree of Life Knowledge and Information Network: filling a gap for collaborative research in biological systematics. PMID:22724002
From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format. PMID:22371687 -
The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet
PubMed citations: 47.
47 articles citing: The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet
A database of common vampire bat reports. PMID:35173163
Open Data Practices among Users of Primary Biodiversity Data. PMID:34733117
Towards a Post-Graduate Level Curriculum for Biodiversity Informatics. Perspectives from the Global Biodiversity Information Facility (GBIF) Community. PMID:34720633
The role of metadata in reproducible computational research. PMID:34553169
Knowledge gaps hamper understanding the relationship between fragmentation and biodiversity loss: the case of Atlantic Forest fruit-feeding butterflies. PMID:34239779
A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers. PMID:33983435
Decentralized but Globally Coordinated Biodiversity Data. PMID:33693407
Preserve a Voucher Specimen! The Critical Need for Integrating Natural History Collections in Infectious Disease Studies. PMID:33436435
New records of the land and freshwater molluscs of Gran Canaria (Canary Islands, Spain). PMID:33223872
A checklist recipe: making species data open and FAIR. PMID:33181821
Pest categorisation of Naupactus leucoloma. PMID:32874305
Long-term monitoring of the Iberian ibex population in the Sierra Nevada of the southeast Iberian Peninsula. PMID:32587252
Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB). PMID:32463383
Bee species checklist of the San Francisco Peaks, Arizona. PMID:32292276
Watervogels - Wintering waterbirds in Flanders, Belgium. PMID:32148427
A data management workflow of biodiversity data from the field to data users. PMID:31890356
Improved standardization of transcribed digital specimen data. PMID:31819990
A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples. PMID:31811161
Dataset of occurrence and incidence of pine processionary moth in Andalusia, south Spain. PMID:31210747
ZooArchNet: Connecting zooarchaeological specimens to the biodiversity and archaeology data networks. PMID:30978247
Togo National Herbarium database. PMID:30275736
The inland water macro-invertebrate occurrences in Flanders, Belgium. PMID:29861649
Herbarium collection of the Rio de Janeiro Botanical Garden (RB), Brazil. PMID:29674937
Data from the ichthyological collection of the Museu Paraense Emílio Goeldi. PMID:29114167
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples. PMID:28771471
Repatriation Data: More than two million species occurrence records added to the Brazilian Biodiversity Information Facility Repository (SiBBr). PMID:28765723
A distribution and taxonomic reference dataset of Geranium in the New World. PMID:28398302
Toward a new data standard for combined marine biological and environmental datasets - expanding OBIS beyond species occurrences. PMID:28325978
Ten Simple Rules for Digital Data Storage. PMID:27764088
The Global Genome Biodiversity Network (GGBN) Data Standard specification. PMID:27694206
Global Genome Biodiversity Network: saving a blueprint of the Tree of Life - a botanical perspective. PMID:27328683
A database on the distribution of butterflies (Lepidoptera) in northern Belgium (Flanders and the Brussels Capital Region). PMID:27199606
Dataset of Passerine bird communities in a Mediterranean high mountain (Sierra Nevada, Spain). PMID:26865820
The geospatial data quality REST API for primary biodiversity data. PMID:26833340
"Life in Data"--Outcome of a Multi-Disciplinary, Interactive Biobanking Conference Session on Sample Data. PMID:26808538
A Standardized Reference Data Set for Vertebrate Taxon Name Resolution. PMID:26760296
B-HIT - A Tool for Harvesting and Indexing Biodiversity Data. PMID:26544980
Utilizing online resources for taxonomy: a cybercatalog of Afrotropical apiocerid flies (Insecta: Diptera: Apioceridae). PMID:26491392
Dataset of MIGRAME Project (Global Change, Altitudinal Range Shift and Colonization of Degraded Habitats in Mediterranean Mountains). PMID:26491387
BaMBa: towards the integrated management of Brazilian marine environmental data. PMID:26454874
Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve. PMID:26379469
Dataset of Phenology of Mediterranean high-mountain meadows flora (Sierra Nevada, Spain). PMID:25878552
VIS - A database on the distribution of fishes in inland and estuarine waters in Flanders, Belgium. PMID:25685001
Corrected data re-harvested: curating literature in the era of networked biodiversity informatics. PMID:25632264
Fishing for data and sorting the catch: assessing the data quality, completeness and fitness for use of data in marine biogeographic databases. PMID:25632106
The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices. PMID:25470125
The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web. PMID:25073721 -
Linking multiple biodiversity informatics platforms with Darwin Core Archives
PubMed citations: 6.
6 articles citing: Linking multiple biodiversity informatics platforms with Darwin Core Archives
Standardisation of bioacoustic terminology for insects. PMID:32848502
The Natural History Museum Data Portal. PMID:30985890
An online taxonomic database of the stick insect (Phasmida) egg-parasitising subfamilies Amiseginae and Loboscelidiinae (Hymenoptera: Chrysididae). PMID:26929715
Global Cicada Sound Collection I: Recordings from South Africa and Malawi by B. W. Price & M. H. Villet and harvesting of BioAcoustica data by GBIF. PMID:26379465
BioAcoustica: a free and open repository and analysis platform for bioacoustics. PMID:26055102
The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth. PMID:24891832
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More detailed information about this field from each metasource.
biological sample annotation
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
geographical location
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
taxonomic classification
metasource: Fairsharing.org
version: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Tags
More detailed information about this field from each metasource.
biological sample annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
geographical location
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
taxonomic classification
metasource: Fairsharing.orgversion: FAIRsharing.org: DwC; Darwin Core; DOI: https://doi.org/10.25504/FAIRsharing.xvf5y3; Last edited: Jan. 9, 2021, 2:29 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
biological sample annotation geographical location taxonomic classification
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