Other names: connectf
ConnecTF is a platform to build gene networks by integrating transcription factor-target gene interactions.
gene expression plant biology molecular interactions, pathways and networks gene transcripts chip-seq
Expression atlas of Selaginella moellendorffii provides insights into the evolution of vasculature, secondary metabolism and roots | A platform dedicated to the visualization and analysis of plant co- ...
Comprehensive, user-friendly, and interactive web resource for analyzing cancer OMICS data.
A database of human tissue functional gene networks built with a large compendium of curated RNA-seq data.
Database that aims to provide a high-quality functional circRNA resource including experimentally validated and computationally predicted functions.
We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors i ...
An expression knowledgebase at single cell/nucleus level for the discovery of coding-noncoding RNA functional interactions in skeletal muscle.
Plant metabolic, regulatory and signaling pathways
A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes. PRESDB:pig RNA Editing database
An integrated resource for human miRNA-Transcription Factor-Target Gene coregulatory networks and associated Feed Forward Loops. Defence Institute of Physiology and Allied Science. miRNA and Transcr ...
A database of comprehensive miRNA target prediction framework for sugarcane (Saccharum officinarum L.).
Curated database to annotate gene promoters identified from ChIP-seq results. Users can search the database based on gene id/symbol, or by specific tissue/cell type and filter results based on any com ...
A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication.
a tool for analyzing putative transcription factor binding sites in salmonid genomes | SalMotifDB: cis-regulatory motif database for salmonids | We're getting there, it's worth the wait
ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...
RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of the cell. On the other hand, it is also a model of the organization of the genes in transcription un ...
Stress Knowledge Map: A compilation of knowledge on mechanisms underlying responses of plants to stress, the so called stress signalling network.
Rice transcriptome under natural conditions
TF-target relationsips inferred from single cell and bulk RNA-seq datasets
A comprehensive web-atlas for p53, p63, and cell cycle-dependent gene regulation.
Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.