Synthetic Biology Open Language
Names
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Synthetic Biology Open Language
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
SBOL
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
More detailed information about this field from each metasource.
Synthetic Biology Open Language
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
SBOL
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
More detailed information about this field from each metasource.
Synthetic Biology Open Language
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
SBOL
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The Synthetic Biology Open Language (SBOL) is a standard used for the in silico representation of genetic designs. SBOL is designed to allow synthetic biologists and genetic engineers to electronically exchange designs, send and receive genetic designs to and from biofabrication centres, facilitate storage of genetic designs in repositories, and embed genetic designs in publications.
Description
More detailed information about this field from each metasource.
The Synthetic Biology Open Language (SBOL) is a standard used for the in silico representation of genetic designs. SBOL is designed to allow synthetic biologists and genetic engineers to electronically exchange designs, send and receive genetic designs to and from biofabrication centres, facilitate storage of genetic designs in repositories, and embed genetic designs in publications.
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
https://sbolstandard.org/Webpage
More detailed information about this field from each metasource.
https://sbolstandard.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
PMID: 24911500
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Proposed data model for the next version of the synthetic biology open language
PMID: 24896221
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
PMID: 24911500
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Proposed data model for the next version of the synthetic biology open language
PMID: 24896221
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
PubMed citations: 67.
67 articles citing: The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
NOT Gates Based on Protein Degradation as a Case Study for a New Modular Modeling via SBML Level 3-Comp Package. PMID:35360404
Specifications of standards in systems and synthetic biology: status and developments in 2021. PMID:34674411
Data sharing policies: share well and you shall be rewarded. PMID:34604538
The LASER database: Formalizing design rules for metabolic engineering. PMID:34150506
pLannotate: engineered plasmid annotation. PMID:34019636
GMO Genetic Elements Thesaurus (GMO-GET): a controlled vocabulary for the consensus designation of introduced or modified genetic elements in genetically modified organisms. PMID:33546585
The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering. PMID:33015004
Principles of synthetic biology: a MOOC for an emerging field. PMID:32995535
Synthetic Biology: fostering the cyber-biological revolution. PMID:32995500
SEVA 3.1: enabling interoperability of DNA assembly among the SEVA, BioBricks and Type IIS restriction enzyme standards. PMID:32710525
Specifications of standards in systems and synthetic biology: status and developments in 2020. PMID:32598316
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). PMID:32598315
Are synthetic biology standards applicable in everyday research practice? PMID:32567248
The long journey towards standards for engineering biosystems: Are the Molecular Biology and the Biotech communities ready to standardise? PMID:32337821
Enabling community-based metrology for wood-degrading fungi. PMID:32206323
SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts. PMID:31740968
Towards a fully automated algorithm driven platform for biosystems design. PMID:31723141
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation. PMID:31685817
ModelBricks-modules for reproducible modeling improving model annotation and provenance. PMID:31602314
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. PMID:31301675
A multidimensional perspective on microbial interactions. PMID:31187139
Impact framework: A python package for writing data analysis workflows to interpret microbial physiology. PMID:31011536
High-Performance Biocomputing in Synthetic Biology-Integrated Transcriptional and Metabolic Circuits. PMID:30915329
Towards an Aspect-Oriented Design and Modelling Framework for Synthetic Biology. PMID:30568914
A minimum information standard for reproducing bench-scale bacterial cell growth and productivity. PMID:30534611
Harmonizing semantic annotations for computational models in biology. PMID:30462164
A Genetic Circuit Compiler: Generating Combinatorial Genetic Circuits with Web Semantics and Inference. PMID:30408409
Synthetic microbiology as a source of new enterprises and job creation: a Mediterranean perspective. PMID:30328266
An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals. PMID:30271948
Genetic Engineering of Bee Gut Microbiome Bacteria with a Toolkit for Modular Assembly of Broad-Host-Range Plasmids. PMID:29608282
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. PMID:29596055
Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp. PMID:29511798
Quantifying complexity in metabolic engineering using the LASER database. PMID:29468127
Synthetic Gene Expression Circuits for Designing Precision Tools in Oncology. PMID:28894736
Synthetic biology, metaphors and responsibility. PMID:28849542
Engineering biological systems using automated biofoundries. PMID:28602523
Open-source, community-driven microfluidics with Metafluidics. PMID:28591125
Use of processed data to design an orderly logic gate to construct plasmids in GenoCAD. PMID:28476974
Design Automation in Synthetic Biology. PMID:28246188
Can terminators be used as insulators into yeast synthetic gene circuits? PMID:28018483
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration. PMID:28007941
Agent-based modelling in synthetic biology. PMID:27903820
Process-based design of dynamical biological systems. PMID:27686219
Guidelines for Reproducibly Building and Simulating Systems Biology Models. PMID:27429432
Bioinformatics for the synthetic biology of natural products: integrating across the Design-Build-Test cycle. PMID:27185383
The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable. PMID:27051515
Living factories of the future. PMID:26983542
End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis. PMID:26839585
An innovative platform for quick and flexible joining of assorted DNA fragments. PMID:26758940
SBOL Visual: A Graphical Language for Genetic Designs. PMID:26633141
Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization. PMID:26559508
Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants. PMID:26557642
Specifications of Standards in Systems and Synthetic Biology. PMID:26528556
Rule-Based Design of Plant Expression Vectors Using GenoCAD. PMID:26148190
JSBML 1.0: providing a smorgasbord of options to encode systems biology models. PMID:26079347
GenoLIB: a database of biological parts derived from a library of common plasmid features. PMID:25925571
Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative. PMID:25759811
Reply to Intellectual property issues and synthetic biology standards. PMID:25574632
Intellectual property issues and synthetic biology standards. PMID:25574630
Improving collaboration by standardization efforts in systems biology. PMID:25538939
Developments in the tools and methodologies of synthetic biology. PMID:25505788
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently. PMID:25503938
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. PMID:25494900
Community-driven development for computational biology at Sprints, Hackathons and Codefests. PMID:25472764
BioModels: ten-year anniversary. PMID:25414348
SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities. PMID:25392407
Parts & pools: a framework for modular design of synthetic gene circuits. PMID:25340051 -
Proposed data model for the next version of the synthetic biology open language
PubMed citations: 2.
2 articles citing: Proposed data model for the next version of the synthetic biology open language
Engineering biological systems using automated biofoundries. PMID:28602523
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently. PMID:25503938
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dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
modeling and simulation
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
nucleic acid design
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
sequence annotation
metasource: Fairsharing.org
version: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
modeling and simulation
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
nucleic acid design
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
sequence annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: SBOL; Synthetic Biology Open Language; DOI: https://doi.org/10.25504/FAIRsharing.cwf4py; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
dna sequences modeling and simulation nucleic acid design sequence annotation
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