verteberate Homologous Organ Groups
Names
More detailed information about this field from each metasource.
verteberate Homologous Organ Groups
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
vHOG
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
Names
More detailed information about this field from each metasource.
verteberate Homologous Organ Groups
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
vHOG
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
Names
More detailed information about this field from each metasource.
verteberate Homologous Organ Groups
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
vHOG
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. A mapping to species-specific anatomical ontologies is also provided. This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and we provide confidence codes and references when available.
Description
More detailed information about this field from each metasource.
vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. A mapping to species-specific anatomical ontologies is also provided. This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and we provide confidence codes and references when available.
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
Webpage:
http://bioportal.bioontology.org/ontologies/VHOG?p=summaryWebpage
More detailed information about this field from each metasource.
http://bioportal.bioontology.org/ontologies/VHOG?p=summary
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
PMID: 25009735
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
vHOG, a multispecies vertebrate ontology of homologous organs groups
PMID: 22285560
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications
More detailed information about this field from each metasource.
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
PMID: 25009735
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
vHOG, a multispecies vertebrate ontology of homologous organs groups
PMID: 22285560
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
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Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
PubMed citations: 63.
63 articles citing: Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
Representing Normal and Abnormal Physiology as Routes of Flow in ApiNATOMY. PMID:35547570
Harmonizing model organism data in the Alliance of Genome Resources. PMID:35380658
GOing Forward With the Cardiac Conduction System Using Gene Ontology. PMID:35309148
Seeing the Forest and Its Trees Together: Implementing 3D Light Microscopy Pipelines for Cell Type Mapping in the Mouse Brain. PMID:35095432
Convergent evolution of venom gland transcriptomes across Metazoa. PMID:34983844
The Human Disease Ontology 2022 update. PMID:34755882
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. PMID:34634810
Sfaira accelerates data and model reuse in single cell genomics. PMID:34433466
The Infectious Disease Ontology in the age of COVID-19. PMID:34275487
The divergence of alternative splicing between ohnologs in teleost fishes. PMID:34034651
Identification of disease treatment mechanisms through the multiscale interactome. PMID:33741907
The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application. PMID:33677548
Curation of over 10 000 transcriptomic studies to enable data reuse. PMID:33599246
Cerebrum, liver, and muscle regulatory networks uncover maternal nutrition effects in developmental programming of beef cattle during early pregnancy. PMID:33531552
Common cell type nomenclature for the mammalian brain. PMID:33372656
The Gene Ontology resource: enriching a GOld mine. PMID:33290552
The Human Phenotype Ontology in 2021. PMID:33264411
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities. PMID:33028186
Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases. PMID:32500119
A Logical Model of Homology for Comparative Biology. PMID:31596473
Alliance of Genome Resources Portal: unified model organism research platform. PMID:31552413
Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries. PMID:31419946
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. PMID:30576485
MER: a shell script and annotation server for minimal named entity recognition and linking. PMID:30519990
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. PMID:30476213
ChEMBL: towards direct deposition of bioassay data. PMID:30398643
The mouse Gene Expression Database (GXD): 2019 update. PMID:30335138
Mapping Molecular Datasets Back to the Brain Regions They are Extracted from: Remembering the Native Countries of Hypothalamic Expatriates and Refugees. PMID:30334222
Classification, Ontology, and Precision Medicine. PMID:30304648
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
Using OWL reasoning to support the generation of novel gene sets for enrichment analysis. PMID:29444698
Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine. PMID:29402212
Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes. PMID:29325126
Improving the interoperability of biomedical ontologies with compound alignments. PMID:29316968
Drug target ontology to classify and integrate drug discovery data. PMID:29122012
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates. PMID:28981708
Dead simple OWL design patterns. PMID:28583177
BRIDG: a domain information model for translational and clinical protocol-driven research. PMID:28339791
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
Computational methods for direct cell conversion. PMID:27736295
Navigating the Phenotype Frontier: The Monarch Initiative. PMID:27516611
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices. PMID:27191170
Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation. PMID:27011785
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database. PMID:27009807
Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences. PMID:26871594
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PMID:26870952
Reporting phenotypes in mouse models when considering body size as a potential confounder. PMID:26865945
Emerging semantics to link phenotype and environment. PMID:26713234
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. PMID:26615188
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. PMID:26500251
Use of model organism and disease databases to support matchmaking for human disease gene discovery. PMID:26269093
The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease. PMID:26119816
Disease insights through cross-species phenotype comparisons. PMID:26092691
The mouse gene expression database: New features and how to use them effectively. PMID:26045019
Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies. PMID:26018570
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. PMID:25972520
Linking gene expression to phenotypes via pathway information. PMID:25901272
What to compare and how: Comparative transcriptomics for Evo-Devo. PMID:25864439
Finding our way through phenotypes. PMID:25562316
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. PMID:25140222
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. PMID:24568621 -
vHOG, a multispecies vertebrate ontology of homologous organs groups
PubMed citations: 14.
14 articles citing: vHOG, a multispecies vertebrate ontology of homologous organs groups
A Logical Model of Homology for Comparative Biology. PMID:31596473
Human fetal heart specific coexpression network involves congenital heart disease/defect candidate genes. PMID:28436429
Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices. PMID:27191170
Emerging semantics to link phenotype and environment. PMID:26713234
ZFIN, The zebrafish model organism database: Updates and new directions. PMID:26097180
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. PMID:25957950
What to compare and how: Comparative transcriptomics for Evo-Devo. PMID:25864439
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
Thematic series on biomedical ontologies in JBMS: challenges and new directions. PMID:24602198
The ontology of craniofacial development and malformation for translational craniofacial research. PMID:24124010
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
Comparative modular analysis of gene expression in vertebrate organs. PMID:22458817
Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs. PMID:22457063
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
Tags:
Tags
More detailed information about this field from each metasource.
homologous
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
life cycle stage
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
organ
metasource: Fairsharing.org
version: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
Tags
More detailed information about this field from each metasource.
homologous
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
life cycle stage
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
organ
metasource: Fairsharing.orgversion: FAIRsharing.org: vHOG; verteberate Homologous Organ Groups; DOI: https://doi.org/10.25504/FAIRsharing.8a7a0w; Last edited: May 7, 2019, 11:02 a.m.; Last accessed: Jan 03 2022 7:10 p.m.
homologous life cycle stage organ
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