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SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - England

COVID-19 COG-UK Viral Genome (variant strain data)

Description

More detailed information about this field from each metasource.

COVID-19 COG-UK Viral Genome (variant strain data)

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Webpage:

https://www.healthdatagateway.org/dataset/18e2ce4c-b0a0-4f2b-a12c-0d18bb1a165a

Webpage

More detailed information about this field from each metasource.

https://www.healthdatagateway.org/dataset/18e2ce4c-b0a0-4f2b-a12c-0d18bb1a165a

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Licence:

Name: HDR UK Innovation Gateway Access

Licence name

More detailed information about this field from each metasource.

HDR UK Innovation Gateway Access

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

URL: https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

Licence URL

More detailed information about this field from each metasource.

https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Tags:

Tags
More detailed information about this field from each metasource.

COVID-19
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

health
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

NCS
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

National Core Study
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

covid-19 health national core study

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SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - NI

Summary of SARS-CoV-2 lineages and mutations

SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Wales

The dataset provides information about SARS-CoV-2 variants of concern and variants under investigation in Wales. This includes phylogenetic and mutational information about samples.

COG-UK Viral Genome Sequences

COG-UK Consortium has published a dataset which contains over 20K SARS-CoV-2 viral genome sequences available as open access.

NCBI SARS-CoV

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COVID-19 Wastewater data

Samples of wastewater are collected 7 days a week from sewage treatment plants across England. Samples are analysed to determine the number of gene copies of SARS-CoV-2 per litre using quantitative Po ...

COVID-19 Vaccination Status

Data relating to coronavirus (COVID-19) vaccination status.

COVID-19 Consolidated Deaths (CDDS)

COVID-19 Consolidated Deaths dataset. Similar to the usual Annual deaths extract (SAIL Databank), except this dataset contains additional information with relevance to deaths where Covid-19 is attribu ...

TRACK-COVID

SARS-CoV-2 virus stimulates a rapid antibody response in people with symptomatic and asymptomatic infection. Seroprevalence of SARS-CoV-2 antibodies in a population can serve as a useful measure of ex ...

COVID-19 Vaccination Adverse Reaction

Data relating to any adverse reactions which occur within the first fifteen minutes after administration of the coronavirus (COVID-19) vaccination.

Covid-19 Infection Survey

The purpose of this dataset is to understand the prevalence of COVID-19 in the UK population, including swab results, antibody tests and demographic information.

COVID-19 Test Results (PATD)

Test results for COVID-19 tests.

COVID-19 Data Portal

The COVID-19 Data Portal enables researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The aim of the COVID-19 Data Portal is to facilitate data sharing an ...

COVID-19 Vaccination

Details of completed (processed) COVID-19 vaccinations

COVID-19 Shielded People List (CVSP)

List of high-risk people advised to self-isolate during Covid pandemic.

UK Longitudinal Linkage Collaboration (UK LLC)

20+ Longitudinal Population Studies datasets linked to COVID-19 health datasets held in a TRE hosted by the University of Swansea’s UK Secure Research Platform, accessible to approved UK-based researc ...

Sars-CoV-2 Immunity & REinfection EvaluatioN (SIREN)

Large-scale study testing blood samples and swabs obtained from healthcare workers who work in a clinical setting to see if infection with COVID-19 protects them from future episodes of infection.

Covid-19 UK Non-hospital Antibody Testing Results

The Covid-19 UK Non-hospital Antibody Testing Results (Pillar 3) dataset, also referred to as iElisa, documents individuals that have undergone a finger prick test for antibodies from having had Covid ...

Covid Vaccination Dataset (CVVD)

This dataset covers all patients and vaccinations administered or planned for Covid-19, in or funded by the NHS.

CovidMine

CovidMine is an InterMine dedicated to COVID-19 / SARS-CoV-2 data which integrates confirmed Covid-19 cases, deaths, Sars-CoV-2 reference genome and nucleotide sequences from isolates deposited in Gen ...

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine