RNA Markup Language

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RNA Markup Language

metasource: Fairsharing.org
version: None

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RNAML

metasource: Fairsharing.org
version: None

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Other names: RNAML

RNAML syntax was designed to facilitate the interoperation of multiple RNA informatics programs and to exchange basic RNA molecular information.

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Publications

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RNAML: a standard syntax for exchanging RNA information
PMID: 12088144

metasource: Fairsharing.org
version: None

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• RNAML: a standard syntax for exchanging RNA information PubMed citations: 44.

  44 articles citing: RNAML: a standard syntax for exchanging RNA information

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  Neurodevelopmental Syndrome with Intellectual Disability, Speech Impairment, and Quadrupedia Is Associated with Glutamate Receptor Delta 2 Gene Defect. PMID:35159210

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  The role of SAXS and molecular simulations in 3D structure elucidation of a DNA aptamer against lung cancer. PMID:34458013

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  Modeling and Predicting RNA Three-Dimensional Structures. PMID:33835435

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  Gene variants of coagulation related proteins that interact with SARS-CoV-2. PMID:33730015

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  Potential impact on coagulopathy of gene variants of coagulation related proteins that interact with SARS-CoV-2. PMID:32935103

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  Detection of Nonylphenol with a Gold-Nanoparticle-Based Small-Molecule Sensing System Using an ssDNA Aptamer. PMID:31892242

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  Cas Endonuclease Technology-A Quantum Leap in the Advancement of Barley and Wheat Genetic Engineering. PMID:31146387

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  Designing and analyzing the structure of Tat-BoNT/A(1-448) fusion protein: An in silico approach. PMID:30805378

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  Characterization and Inkjet Printing of an RNA Aptamer for Paper-Based Biosensing of Ciprofloxacin. PMID:30609709

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  JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures. PMID:28582416

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  Gene expression control by Bacillus anthracis purine riboswitches. PMID:28209633

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  Generation of a Stable Plasmid for In Vitro and In Vivo Studies of Staphylococcus Species. PMID:27637878

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  Foamy Virus Protein-Nucleic Acid Interactions during Particle Morphogenesis. PMID:27589786

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  Differential regulation of translation and endocytosis of alternatively spliced forms of the type II bone morphogenetic protein (BMP) receptor. PMID:26739752

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  In Vitro Expansion of CAG, CAA, and Mixed CAG/CAA Repeats. PMID:26270660

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  The microRNA-183 cluster: the family that plays together stays together. PMID:26170234

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  Inhibition of vemurafenib-resistant melanoma by interference with pre-mRNA splicing. PMID:25971842

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  The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles. PMID:25034814

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  U1snRNP-mediated suppression of polyadenylation in conjunction with the RNA structure controls poly (A) site selection in foamy viruses. PMID:23718736

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  YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models. PMID:22844233

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  ViennaRNA Package 2.0. PMID:22115189

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  RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA. PMID:21947200

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  Correlating SHAPE signatures with three-dimensional RNA structures. PMID:21752927

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  RKB: a Semantic Web knowledge base for RNA. PMID:20626922

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  XML-based approaches for the integration of heterogeneous bio-molecular data. PMID:19828083

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  VARNA: Interactive drawing and editing of the RNA secondary structure. PMID:19398448

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  ConStruct: Improved construction of RNA consensus structures. PMID:18442401

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  LeARN: a platform for detecting, clustering and annotating non-coding RNAs. PMID:18194551

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  Semiautomated improvement of RNA alignments. PMID:17804647

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  Informatics challenges in structured RNA. PMID:17611237

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  Predicting helical coaxial stacking in RNA multibranch loops. PMID:17507661

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  RNA localization signals: deciphering the message with bioinformatics. PMID:17452113

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  Coplanar and coaxial orientations of RNA bases and helices. PMID:17339576

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  XML schemas for common bioinformatic data types and their application in workflow systems. PMID:17087823

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  Single nucleotide RNA choreography. PMID:16531589

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  The RNA Ontology Consortium: an open invitation to the RNA community. PMID:16484377

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  Topology of three-way junctions in folded RNAs. PMID:16373494

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  MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. PMID:16043635

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  ILM: a web server for predicting RNA secondary structures with pseudoknots. PMID:15215368

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  CARNAC: folding families of related RNAs. PMID:15215367

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  Sfold web server for statistical folding and rational design of nucleic acids. PMID:15215366

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  Tools for the automatic identification and classification of RNA base pairs. PMID:12824344

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  Vienna RNA secondary structure server. PMID:12824340

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  Mfold web server for nucleic acid folding and hybridization prediction. PMID:12824337

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ribonucleic acid

metasource: Fairsharing.org
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rna