PlantAPAdb

PlantAPAdb provides a comprehensive and manually curated catalog of APA sites in plants based on a large volume of data from diverse biological samples generated by 3′ seq. Currently, PlantAPAdb contains APA sites in seven plant organisms, including Oryza sativa L. (japonica and indica), Arabidopsis thaliana, Chlamydomonas reinhardtii, Medicago truncatula, Trifolium pratense, Populus trichocarpa and Phyllostachys edulis.

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PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants
PMID: 31767692

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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• PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants PubMed citations: 9.

  9 articles citing: PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants

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  An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development. PMID:35139889

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  Analysis Polyadenylation Signal Usage in Sus scrofa. PMID:35049816

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  scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution. PMID:34508354

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  The Detection and Bioinformatic Analysis of Alternative 3' UTR Isoforms as Potential Cancer Biomarkers. PMID:34070203

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  Alternative Polyadenylation in response to temperature stress contributes to gene regulation in Populus trichocarpa. PMID:33446101

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  Plant 3' Regulatory Regions From mRNA-Encoding Genes and Their Uses to Modulate Expression. PMID:32922424

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  Post-transcriptional splicing of nascent RNA contributes to widespread intron retention in plants. PMID:32541953

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  Discovery of alternative polyadenylation dynamics from single cell types. PMID:32382395

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  The Dynamic Kaleidoscope of RNA Biology in Plants. PMID:31908318

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plant biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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rna-seq

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:10.725945

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plant biology gene transcripts model organisms gene expression rna sequence