PhosPhAt

Names
More detailed information about this field from each metasource.

PhosPhAt
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

phosphat
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

Other names: phosphat

Arabidopsis Protein Phosphorylation Site Database

Webpage:

http://phosphat.mpimp-golm.mpg.de/

Publications:

Publications
More detailed information about this field from each metasource.

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
PMID: 19880383
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
PMID: 17984086
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

http://dx.doi.org/10.1093/nar/gks1081
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update PubMed citations: 157.

157 articles citing: PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

Are Methionine Sulfoxide-Containing Proteins Related to Seed Longevity? A Case Study of Arabidopsisthaliana Dry Mature Seeds Using Cyanogen Bromide Attack and Two-Dimensional-Diagonal Electrophoresis. PMID:35214905
Two trehalase isoforms, produced from a single transcript, regulate drought stress tolerance in Arabidopsis thaliana. PMID:35088230
Role of protein phosphatases in the regulation of nitrogen nutrition in plants. PMID:35035144
Regulation of plant phototropic growth by NPH3/RPT2-like substrate phosphorylation and 14-3-3 binding. PMID:34675214
Enzymology and Regulation of δ1-Pyrroline-5-Carboxylate Synthetase 2 From Rice. PMID:34603346
The DREAM complex represses growth in response to DNA damage in Arabidopsis. PMID:34583930
PARROT is a flexible recurrent neural network framework for analysis of large protein datasets. PMID:34533455
Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture. PMID:34357701
Cost-effective circadian mechanism: rhythmic degradation of circadian proteins spontaneously emerges without rhythmic post-translational regulation. PMID:34355141
PhosPhAt 4.0: An Updated Arabidopsis Database for Searching Phosphorylation Sites and Kinase-Target Interactions. PMID:34270056
Plant Phosphopeptides Enrichment by Immobilized Metal Ion Affinity Chromatography. PMID:34270052
SILIA-Based 4C Quantitative PTM Proteomics. PMID:34270050
Insights into topology and membrane interaction characteristics of plastoglobule-localized AtFBN1a and AtLOX2. PMID:34180346
Low ABA concentration promotes root growth and hydrotropism through relief of ABA INSENSITIVE 1-mediated inhibition of plasma membrane H+-ATPase 2. PMID:33731345
Functional and evolutionary analysis of the Arabidopsis 4R-MYB protein SNAPc4 as part of the SNAP complex. PMID:33693812
Abscisic acid regulates secondary cell-wall formation and lignin deposition in Arabidopsis thaliana through phosphorylation of NST1. PMID:33495344
A Novel Putative Microtubule-Associated Protein Is Involved in Arbuscule Development during Arbuscular Mycorrhiza Formation. PMID:33386853
Large-Scale Phosphoproteomic Study of Arabidopsis Membrane Proteins Reveals Early Signaling Events in Response to Cold. PMID:33207747
Determinants of correlated expression of transcription factors and their target genes. PMID:33104784
Global Quantitative Proteomics Studies Revealed Tissue-Preferential Expression and Phosphorylation of Regulatory Proteins in Arabidopsis. PMID:32854314
Lipid kinases PIP5K7 and PIP5K9 are required for polyamine-triggered K+ efflux in Arabidopsis roots. PMID:32666545
The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom. PMID:32640597
Late Embryogenesis Abundant Protein-Client Protein Interactions. PMID:32610443
Patterns of Sequence and Expression Diversification Associate Members of the PADRE Gene Family With Response to Fungal Pathogens. PMID:32547597
FRA1 Kinesin Modulates the Lateral Stability of Cortical Microtubules through Cellulose Synthase-Microtubule Uncoupling Proteins. PMID:32487563
RESTful API for iPTMnet: a resource for protein post-translational modification network discovery. PMID:32395768
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Calcium-Dependent Protein Kinase CPK1 Controls Cell Death by In Vivo Phosphorylation of Senescence Master Regulator ORE1. PMID:32111670
The Arabidopsis Plastidial Glucose-6-Phosphate Transporter GPT1 is Dually Targeted to Peroxisomes via the Endoplasmic Reticulum. PMID:32111666
The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI. PMID:31776249
PROTEIN PHOSPHATASE 2A-B'γ Controls Botrytis cinerea Resistance and Developmental Leaf Senescence. PMID:31659127
Highly ABA-Induced 1 (HAI1)-Interacting protein HIN1 and drought acclimation-enhanced splicing efficiency at intron retention sites. PMID:31611386
Phosphorylation of the Chloroplastic Metalloprotease FtsH in Arabidopsis Characterized by Phos-Tag SDS-PAGE. PMID:31552075
Arabidopsis CTP:phosphocholine cytidylyltransferase 1 is phosphorylated and inhibited by sucrose nonfermenting 1-related protein kinase 1 (SnRK1). PMID:31439667
The High Light Response in Arabidopsis Requires the Calcium Sensor Protein CAS, a Target of STN7- and STN8-Mediated Phosphorylation. PMID:31417591
Evidence that the Arabidopsis thaliana 3-hydroxy-3-methylglutaryl-CoA reductase 1 is phosphorylated at Ser577 in planta. PMID:31275031
Sucrose-induced Receptor Kinase 1 is Modulated by an Interacting Kinase with Short Extracellular Domain. PMID:31147492
CRK2 Enhances Salt Tolerance by Regulating Callose Deposition in Connection with PLDα1. PMID:31118265
Comparative Phosphoproteomic Analysis of Barley Embryos with Different Dormancy during Imbibition. PMID:30669653
Clinically Relevant Post-Translational Modification Analyses-Maturing Workflows and Bioinformatics Tools. PMID:30577541
G protein subunit phosphorylation as a regulatory mechanism in heterotrimeric G protein signaling in mammals, yeast, and plants. PMID:30413679
The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing. PMID:30309899
Amino acid substitutions in CPC-LIKE MYB reveal residues important for protein stability in Arabidopsis roots. PMID:30308079
Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity. PMID:30261844
Monitoring of Plant Protein Post-translational Modifications Using Targeted Proteomics. PMID:30174677
Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development. PMID:30053161
Regulation of Plant Microprocessor Function in Shaping microRNA Landscape. PMID:29922322
PhosContext2vec: a distributed representation of residue-level sequence contexts and its application to general and kinase-specific phosphorylation site prediction. PMID:29844483
Nuclear Signaling of Plant MAPKs. PMID:29696029
Cold and Heat Stress Diversely Alter Both Cauliflower Respiration and Distinct Mitochondrial Proteins Including OXPHOS Components and Matrix Enzymes. PMID:29547512
Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. PMID:29535223
Establishment of Dimethyl Labeling-based Quantitative Acetylproteomics in Arabidopsis. PMID:29440448
Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals. PMID:29403507
The common bean COK-4 and the Arabidopsis FER kinase domain share similar functions in plant growth and defence. PMID:29352746
Activation of the LRR Receptor-Like Kinase PSY1R Requires Transphosphorylation of Residues in the Activation Loop. PMID:29230231
Recent Advances in Substrate Identification of Protein Kinases in Plants and Their Role in Stress Management. PMID:29204081
ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. PMID:29126202
Highly Efficient Single-Step Enrichment of Low Abundance Phosphopeptides from Plant Membrane Preparations. PMID:29042862
Quantitative Phosphoproteomic Analysis Provides Insight into the Response to Short-Term Drought Stress in Ammopiptanthus mongolicus Roots. PMID:29039783
Chlorophyte aspartyl aminopeptidases: Ancient origins, expanded families, new locations, and secondary functions. PMID:29023459
Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton-Pumping Pyrophosphatase (AVP1). PMID:28955362
The RING-Type E3 Ligase XBAT35.2 Is Involved in Cell Death Induction and Pathogen Response. PMID:28951488
Directional cell expansion requires NIMA-related kinase 6 (NEK6)-mediated cortical microtubule destabilization. PMID:28798328
Significant and unique changes in phosphorylation levels of four phosphoproteins in two apple rootstock genotypes under drought stress. PMID:28710562
Comparative Analysis of Phosphoproteome Remodeling After Short Term Water Stress and ABA Treatments versus Longer Term Water Stress Acclimation. PMID:28443116
The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). PMID:28443108
Nitrate signaling and early responses in Arabidopsis roots. PMID:28369507
Proteome Profiling of Wheat Shoots from Different Cultivars. PMID:28348574
PAPE (Prefractionation-Assisted Phosphoprotein Enrichment): A Novel Approach for Phosphoproteomic Analysis of Green Tissues from Plants. PMID:28250405
Identification of critical functional residues of receptor-like kinase ERECTA. PMID:28207053
Comparative Phosphoproteomic Analysis under High-Nitrogen Fertilizer Reveals Central Phosphoproteins Promoting Wheat Grain Starch and Protein Synthesis. PMID:28194157
Protein Bioinformatics Databases and Resources. PMID:28150231
Genome Wide Analysis of Fatty Acid Desaturation and Its Response to Temperature. PMID:28108698
Comparative Phosphoproteomics Reveals an Important Role of MKK2 in Banana (Musa spp.) Cold Signal Network. PMID:28106078
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
Orosomucoid Proteins Interact with the Small Subunit of Serine Palmitoyltransferase and Contribute to Sphingolipid Homeostasis and Stress Responses in Arabidopsis. PMID:27923879
Differential Gene Expression and Protein Phosphorylation as Factors Regulating the State of the Arabidopsis SNX1 Protein Complexes in Response to Environmental Stimuli. PMID:27725825
Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1. PMID:27669979
DAO1 catalyzes temporal and tissue-specific oxidative inactivation of auxin in Arabidopsis thaliana. PMID:27651492
Cyclin-dependent kinase activity enhances phosphatidylcholine biosynthesis in Arabidopsis by repressing phosphatidic acid phosphohydrolase activity. PMID:27595588
Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana. PMID:27532006
eIF4A RNA Helicase Associates with Cyclin-Dependent Protein Kinase A in Proliferating Cells and Is Modulated by Phosphorylation. PMID:27388680
Identification of Cargo for Adaptor Protein (AP) Complexes 3 and 4 by Sucrose Gradient Profiling. PMID:27371946
Identification of Phosphoinositide-Binding Protein PATELLIN2 as a Substrate of Arabidopsis MPK4 MAP Kinase during Septum Formation in Cytokinesis. PMID:27335345
Jasmonates: signal transduction components and their roles in environmental stress responses. PMID:27086135
Male gametophyte development and function in angiosperms: a general concept. PMID:26728623
Conservation of the abscission signaling peptide IDA during Angiosperm evolution: withstanding genome duplications and gain and loss of the receptors HAE/HSL2. PMID:26579174
Large-scale comparative phosphoprotein analysis of maize seedling leaves during greening. PMID:26497871
Plant mitochondrial dynamics and the role of membrane lipids. PMID:26317892
Suppressor mutations in the Glutamine Dumper1 protein dissociate disturbance in amino acid transport from other characteristics of the Gdu1D phenotype. PMID:26300894
Functional characterization of PCRK1, a putative protein kinase with a role in immunity. PMID:26237268
Regulation of endomembrane biogenesis in arabidopsis by phospatidic acid hydrolase. PMID:26225871
Comparison of phosphorylation patterns across eukaryotes by discriminative N-gram analysis. PMID:26224486
Enrichment and Analysis of Intact Phosphoproteins in Arabidopsis Seedlings. PMID:26158488
The plant Polycomb repressive complex 1 (PRC1) existed in the ancestor of seed plants and has a complex duplication history. PMID:25881027
PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis. PMID:25511433
Computational phosphoproteomics: from identification to localization. PMID:25475148
Integrating phosphoproteomics in systems biology. PMID:25349677
Border control: selectivity of chloroplast protein import and regulation at the TOC-complex. PMID:25278954
The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification. PMID:24984858
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. PMID:24894044
Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L. PMID:24885693
Transgenic tobacco overexpressing Brassica juncea HMG-CoA synthase 1 shows increased plant growth, pod size and seed yield. PMID:24847714
Quantitative phosphoproteomics analysis of nitric oxide-responsive phosphoproteins in cotton leaf. PMID:24714030
Plasma membrane lipid-protein interactions affect signaling processes in sterol-biosynthesis mutants in Arabidopsis thaliana. PMID:24672530
Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling. PMID:24567189
DRM1 and DRM2 expression regulation: potential role of splice variants in response to stress and environmental factors in Arabidopsis. PMID:24442277
Correlations between predicted protein disorder and post-translational modifications in plants. PMID:24403539
Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana. PMID:24400017
Proteome and phosphoproteome characterization reveals new response and defense mechanisms of Brachypodium distachyon leaves under salt stress. PMID:24335353
MASCP gator: an overview of the Arabidopsis proteomic aggregation portal. PMID:24167507
Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development. PMID:23933881
Target specificity among canonical nuclear poly(A) polymerases in plants modulates organ growth and pathogen response. PMID:23918356
Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis. PMID:23820729
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint. PMID:23749465
Recombinant β-1,3-1,4-glucanase from Theobroma cacao impairs Moniliophthora perniciosa mycelial growth. PMID:23666150
Advancements in the analysis of the Arabidopsis plasma membrane proteome. PMID:23596451
Phosphoglycerolipids are master players in plant hormone signal transduction. PMID:23471417
Overexpression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in abscisic acid-induced stomatal closure. PMID:23341362
Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth. PMID:23328941
Quantitation, networking, and function of protein phosphorylation in plant cell. PMID:23316209
Phosphorylation and stabilization of Arabidopsis MAP kinase phosphatase 1 in response to UV-B stress. PMID:23188831
Functional phosphoproteomic analysis reveals that a serine-62-phosphorylated isoform of ethylene response factor110 is involved in Arabidopsis bolting. PMID:23188807
Signal integration by chloroplast phosphorylation networks: an update. PMID:23181067
Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography. PMID:23172892
PhosPhAt goes kinases--searchable protein kinase target information in the plant phosphorylation site database PhosPhAt. PMID:23172287
Phosphoproteomic analysis reveals major default phosphorylation sites outside long intrinsically disordered regions of Arabidopsis plasma membrane proteins. PMID:23110452
Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana. PMID:22973286
P(3)DB: An Integrated Database for Plant Protein Phosphorylation. PMID:22973285
Post-translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding. PMID:22899623
GabiPD - The GABI Primary Database integrates plant proteomic data with gene-centric information. PMID:22787465
Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology. PMID:22723801
Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data. PMID:22701463
Calcium-dependent protein kinases from Arabidopsis show substrate specificity differences in an analysis of 103 substrates. PMID:22645532
The Arabidopsis CstF64-Like RSR1/ESP1 Protein Participates in Glucose Signaling and Flowering Time Control. PMID:22629280
Glutathione transferases. PMID:22303257
Cross-talk between calcium signalling and protein phosphorylation at the thylakoid. PMID:22197893
PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae. PMID:22182631
Identification of a protein network interacting with TdRF1, a wheat RING ubiquitin ligase with a protective role against cellular dehydration. PMID:22167118
Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar. PMID:22074553
Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings. PMID:22060019
The JAZ proteins: a crucial interface in the jasmonate signaling cascade. PMID:21963667
Enhancing Arabidopsis leaf growth by engineering the BRASSINOSTEROID INSENSITIVE1 receptor kinase. PMID:21795582
Altered germination and subcellular localization patterns for PUB44/SAUL1 in response to stress and phytohormone treatments. PMID:21738636
Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis. PMID:21712416
Signal processing by protein tyrosine phosphorylation in plants. PMID:21628997
A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. PMID:21423366
Motif-All: discovering all phosphorylation motifs. PMID:21342552
The Musite open-source framework for phosphorylation-site prediction. PMID:21210988
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. PMID:21075962
Large-scale analysis of phosphorylated proteins in maize leaf. PMID:21053013
EAR motif-mediated transcriptional repression in plants: an underlying mechanism for epigenetic regulation of gene expression. PMID:20935498
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. PMID:20702892
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. PMID:20594336
Plastidial thioredoxin z interacts with two fructokinase-like proteins in a thiol-dependent manner: evidence for an essential role in chloroplast development in Arabidopsis and Nicotiana benthamiana. PMID:20511297
Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants. PMID:20466843
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor PubMed citations: 135.

135 articles citing: PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

The Structure of the Arabidopsis PEX4-PEX22 Peroxin Complex-Insights Into Ubiquitination at the Peroxisomal Membrane. PMID:35300425
Phytochrome A Mediates the Disassembly of Processing Bodies in Far-Red Light. PMID:35283917
Biosynthesis and the Roles of Plant Sterols in Development and Stress Responses. PMID:35216448
Two trehalase isoforms, produced from a single transcript, regulate drought stress tolerance in Arabidopsis thaliana. PMID:35088230
A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana. PMID:34906086
DeepPhospho accelerates DIA phosphoproteome profiling through in silico library generation. PMID:34795227
Phosphorylation of NONPHOTOTROPIC HYPOCOTYL3 affects photosensory adaptation during the phototropic response. PMID:34608954
PARROT is a flexible recurrent neural network framework for analysis of large protein datasets. PMID:34533455
Phosphoinositide Recognition Sites Are Blocked by Metabolite Attachment. PMID:34368138
Characterization of the Free and Membrane-Associated Fractions of the Thylakoid Lumen Proteome in Arabidopsis thaliana. PMID:34360890
Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture. PMID:34357701
PhosPhAt 4.0: An Updated Arabidopsis Database for Searching Phosphorylation Sites and Kinase-Target Interactions. PMID:34270056
Plant Phosphopeptides Enrichment by Immobilized Metal Ion Affinity Chromatography. PMID:34270052
G3BPs in Plant Stress. PMID:34177995
A deep learning based approach for prediction of Chlamydomonas reinhardtii phosphorylation sites. PMID:34131195
Low ABA concentration promotes root growth and hydrotropism through relief of ABA INSENSITIVE 1-mediated inhibition of plasma membrane H+-ATPase 2. PMID:33731345
Mitochondrial Kinases and the Role of Mitochondrial Protein Phosphorylation in Health and Disease. PMID:33498615
Diurnal dynamics of the Arabidopsis rosette proteome and phosphoproteome. PMID:33278033
Large-Scale Phosphoproteomic Study of Arabidopsis Membrane Proteins Reveals Early Signaling Events in Response to Cold. PMID:33207747
Determinants of correlated expression of transcription factors and their target genes. PMID:33104784
Phosphorylation of the CAMTA3 Transcription Factor Triggers Its Destabilization and Nuclear Export. PMID:32769161
Comparative phosphoproteomic analysis of BR-defective mutant reveals a key role of GhSK13 in regulating cotton fiber development. PMID:32632733
Functional Features of TREHALOSE-6-PHOSPHATE SYNTHASE1, an Essential Enzyme in Arabidopsis. PMID:32276986
The Arabidopsis Plastidial Glucose-6-Phosphate Transporter GPT1 is Dually Targeted to Peroxisomes via the Endoplasmic Reticulum. PMID:32111666
Mut9p-LIKE KINASE Family Members: New Roles of the Plant-Specific Casein Kinase I in Plant Growth and Development. PMID:32106561
Phosphorylation of the Chloroplastic Metalloprotease FtsH in Arabidopsis Characterized by Phos-Tag SDS-PAGE. PMID:31552075
The High Light Response in Arabidopsis Requires the Calcium Sensor Protein CAS, a Target of STN7- and STN8-Mediated Phosphorylation. PMID:31417591
Evidence that the Arabidopsis thaliana 3-hydroxy-3-methylglutaryl-CoA reductase 1 is phosphorylated at Ser577 in planta. PMID:31275031
CRK2 Enhances Salt Tolerance by Regulating Callose Deposition in Connection with PLDα1. PMID:31118265
CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis. PMID:30811403
Global Phosphoproteomic Analysis Reveals the Defense and Response Mechanisms of Jatropha Curcas Seedling under Chilling Stress. PMID:30626061
G protein subunit phosphorylation as a regulatory mechanism in heterotrimeric G protein signaling in mammals, yeast, and plants. PMID:30413679
Heterotrimeric G-Protein-Dependent Proteome and Phosphoproteome in Unstimulated Arabidopsis Roots. PMID:30407730
The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing. PMID:30309899
Monitoring of Plant Protein Post-translational Modifications Using Targeted Proteomics. PMID:30174677
A phosphorylation switch turns a positive regulator of phototropism into an inhibitor of the process. PMID:29921904
Sequence-based prediction of physicochemical interactions at protein functional sites using a function-and-interaction-annotated domain profile database. PMID:29859055
Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. PMID:29535223
Recent Advances in Substrate Identification of Protein Kinases in Plants and Their Role in Stress Management. PMID:29204081
iPTMnet: an integrated resource for protein post-translational modification network discovery. PMID:29145615
Highly Efficient Single-Step Enrichment of Low Abundance Phosphopeptides from Plant Membrane Preparations. PMID:29042862
Cold Treatment Induces Transient Mitochondrial Fragmentation in Arabidopsis thaliana in a Way that Requires DRP3A but not ELM1 or an ELM1-Like Homologue, ELM2. PMID:29039787
ABA-Induced Stomatal Closure Involves ALMT4, a Phosphorylation-Dependent Vacuolar Anion Channel of Arabidopsis. PMID:28874508
PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection. PMID:28761071
Shining Light on the Function of NPH3/RPT2-Like Proteins in Phototropin Signaling. PMID:28720608
Peroxiredoxins and Redox Signaling in Plants. PMID:28594234
PAPE (Prefractionation-Assisted Phosphoprotein Enrichment): A Novel Approach for Phosphoproteomic Analysis of Green Tissues from Plants. PMID:28250405
Mapping Biological Networks from Quantitative Data-Independent Acquisition Mass Spectrometry: Data to Knowledge Pipelines. PMID:28150249
Dynamic Phosphoproteome Analysis of Seedling Leaves in Brachypodium distachyon L. Reveals Central Phosphorylated Proteins Involved in the Drought Stress Response. PMID:27748408
Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1. PMID:27669979
Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation. PMID:27545962
Abundant protein phosphorylation potentially regulates Arabidopsis anther development. PMID:27531888
Regulation of Leaf Starch Degradation by Abscisic Acid Is Important for Osmotic Stress Tolerance in Plants. PMID:27436713
eIF4A RNA Helicase Associates with Cyclin-Dependent Protein Kinase A in Proliferating Cells and Is Modulated by Phosphorylation. PMID:27388680
Plant G-Proteins Come of Age: Breaking the Bond with Animal Models. PMID:27252940
Male gametophyte development and function in angiosperms: a general concept. PMID:26728623
Towards understanding peroxisomal phosphoregulation in Arabidopsis thaliana. PMID:26649560
Changes in the Phosphoproteome and Metabolome Link Early Signaling Events to Rearrangement of Photosynthesis and Central Metabolism in Salinity and Oxidative Stress Response in Arabidopsis. PMID:26471895
Phosphorylation at serine 52 and 635 does not alter the transport properties of glucosinolate transporter AtGTR1. PMID:26340317
Plant mitochondrial dynamics and the role of membrane lipids. PMID:26317892
Suppressor mutations in the Glutamine Dumper1 protein dissociate disturbance in amino acid transport from other characteristics of the Gdu1D phenotype. PMID:26300894
Comparison of phosphorylation patterns across eukaryotes by discriminative N-gram analysis. PMID:26224486
Enrichment and Analysis of Intact Phosphoproteins in Arabidopsis Seedlings. PMID:26158488
Rice_Phospho 1.0: a new rice-specific SVM predictor for protein phosphorylation sites. PMID:26149854
Proteomic analysis of crop plants under abiotic stress conditions: where to focus our research? PMID:26097486
Computational phosphoproteomics: from identification to localization. PMID:25475148
PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana. PMID:25262228
Arabinogalactan glycosyltransferases target to a unique subcellular compartment that may function in unconventional secretion in plants. PMID:25074762
Engineering α-amylase levels in wheat grain suggests a highly sophisticated level of carbohydrate regulation during development. PMID:25053646
Metabolic control of redox and redox control of metabolism in plants. PMID:24960279
Quantitative phosphoproteomic profiling of fiber differentiation and initiation in a fiberless mutant of cotton. PMID:24923550
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. PMID:24894044
Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L. PMID:24885693
RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals. PMID:24771658
PSEA: Kinase-specific prediction and analysis of human phosphorylation substrates. PMID:24681538
The Arabidopsis cytosolic proteome: the metabolic heart of the cell. PMID:24550929
Selective mRNA sequestration by OLIGOURIDYLATE-BINDING PROTEIN 1 contributes to translational control during hypoxia in Arabidopsis. PMID:24469793
DRM1 and DRM2 expression regulation: potential role of splice variants in response to stress and environmental factors in Arabidopsis. PMID:24442277
Proteome and phosphoproteome characterization reveals new response and defense mechanisms of Brachypodium distachyon leaves under salt stress. PMID:24335353
MASCP gator: an overview of the Arabidopsis proteomic aggregation portal. PMID:24167507
Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development. PMID:23933881
Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis. PMID:23820729
Mass spectrometric identification of in vivo phosphorylation sites of differentially expressed proteins in elongating cotton fiber cells. PMID:23516553
Overexpression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in abscisic acid-induced stomatal closure. PMID:23341362
Quantitation, networking, and function of protein phosphorylation in plant cell. PMID:23316209
DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. PMID:23193290
Phosphorylation and stabilization of Arabidopsis MAP kinase phosphatase 1 in response to UV-B stress. PMID:23188831
PhosPhAt goes kinases--searchable protein kinase target information in the plant phosphorylation site database PhosPhAt. PMID:23172287
Prediction of protein phosphorylation sites by using the composition of k-spaced amino acid pairs. PMID:23110047
Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana. PMID:22973286
P(3)DB: An Integrated Database for Plant Protein Phosphorylation. PMID:22973285
Predicting and analyzing protein phosphorylation sites in plants using musite. PMID:22934099
Identifying protein phosphorylation sites with kinase substrate specificity on human viruses. PMID:22844408
From bench to bountiful harvests: a road map for the next decade of Arabidopsis research. PMID:22751212
Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology. PMID:22723801
Calcium-dependent protein kinases from Arabidopsis show substrate specificity differences in an analysis of 103 substrates. PMID:22645532
The green proteome: challenges in plant proteomics. PMID:22639573
Understanding Plant Cellulose Synthases through a Comprehensive Investigation of the Cellulose Synthase Family Sequences. PMID:22629257
MMFPh: a maximal motif finder for phosphoproteomics datasets. PMID:22531218
PhosphoRice: a meta-predictor of rice-specific phosphorylation sites. PMID:22305189
Cross-talk between calcium signalling and protein phosphorylation at the thylakoid. PMID:22197893
Stress-responsive mitogen-activated protein kinases interact with the EAR motif of a poplar zinc finger protein and mediate its degradation through the 26S proteasome. PMID:21873571
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis. PMID:21799034
Quantitative plant phosphoproteomics. PMID:21764629
Protein kinase signaling networks in plant innate immunity. PMID:21704551
PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity. PMID:21703007
Regulation of starch biosynthesis in response to a fluctuating environment. PMID:21378102
Motif-All: discovering all phosphorylation motifs. PMID:21342552
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. PMID:21075962
The laccase multigene family in Arabidopsis thaliana: towards addressing the mystery of their gene function(s). PMID:21063888
RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans. PMID:21037261
AtPID: the overall hierarchical functional protein interaction network interface and analytic platform for Arabidopsis. PMID:21036873
Early cytokinin response proteins and phosphoproteins of Arabidopsis thaliana identified by proteome and phosphoproteome profiling. PMID:20974740
EAR motif-mediated transcriptional repression in plants: an underlying mechanism for epigenetic regulation of gene expression. PMID:20935498
Toward a complete in silico, multi-layered embryonic stem cell regulatory network. PMID:20890967
The acidic A-domain of Arabidopsis TOC159 occurs as a hyperphosphorylated protein. PMID:20457805
Role of plastid protein phosphatase TAP38 in LHCII dephosphorylation and thylakoid electron flow. PMID:20126264
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship. PMID:20122181
Genome-wide analysis of ethylene-responsive element binding factor-associated amphiphilic repression motif-containing transcriptional regulators in Arabidopsis. PMID:20097792
Phosphoproteomic identification and phylogenetic analysis of ribosomal P-proteins in Populus dormant terminal buds. PMID:20072825
Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. PMID:19923235
Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana. PMID:19900291
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. PMID:19880383
Phosphorylation of plant translation initiation factors by CK2 enhances the in vitro interaction of multifactor complex components. PMID:19509420
Differential phosphorylation of plant translation initiation factors by Arabidopsis thaliana CK2 holoenzymes. PMID:19509278
Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. PMID:19403727
Web-queryable large-scale data sets for hypothesis generation in plant biology. PMID:19401381
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. PMID:19383128
Phosphorylation site mapping of soluble proteins: bioinformatical filtering reveals potential plastidic phosphoproteins in Arabidopsis thaliana. PMID:19238429
Prediction of kinase-specific phosphorylation sites using conditional random fields. PMID:18940828
P3DB: a plant protein phosphorylation database. PMID:18931372
PPDB, the Plant Proteomics Database at Cornell. PMID:18832363
GabiPD: the GABI primary database--a plant integrative 'omics' database. PMID:18812395
Tyrosine phosphorylation of plant tubulin. PMID:18800224
The Molecular Biology Database Collection: 2008 update. PMID:18025043
http://dx.doi.org/10.1093/nar/gks1081

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metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

signalling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

arabidopsis thaliana
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

proteomics experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:50.925685

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Golm Metabolome Database

MAtDB2

AtPID

Arabidopsis MPSS

Arabidopsis Mitochondrial Protein Database

PLprot

CGDB

AthaMap

ASRP - Arabidopsis Small RNA Project

The Arabidopsis Gene Regulatory Information Server

KBDOCK

AgingChart

GEM2Net

Plant Metabolomics

SeedGenes

NASCarrays (obsolete)

Arabidopsis Nucleolar Protein Database

pathDIP

AraPheno

CATMA - Complete Arabidopsis Transcriptome MicroArray