Other names: pf-phospho
A machine learning-based phosphorylation sites prediction tool for Plasmodium proteins.
protein modifications protein interaction literature and language proteomics
Phospho.ELM is a manually curated database of eukaryotic phosphorylation sites. The resource includes data collected from published literature as well as high-throughput data sets.
a set of metadata to record transformative machine learning experiments with LINCS dataset
The machine learning methodology taxonomy mapping project is focused on gathering the terminology focused on machine learning and mapping the controlled and users' natural language to form a mapping f ...
Data, Optimization, Model and Evaluation in Machine Learning (DOME-ML, or DOME) is a set of community-wide guidelines, recommendations and checklists spanning these four areas aiming to help establish ...
The Open Machine Learning project is an inclusive movement to build an open, organized, online ecosystem for machine learning. We build open source tools to discover (and share) open data from any dom ...
BioConceptVec is a collection of concept embeddings on primary biological concepts mentioned in the biomedical literature.
Phospho3D is a database of three-dimensional structures of phosphorylation sites which stores information retrieved from the phospho.ELM database and which is enriched with structural information and ...
Machine learning approach to classify genes and genera in the family Geminiviridae.
Automatization and self-maintenance of the O-GlcNAcome catalog.
EPSD (Eukaryotic Phosphorylation Sites Database) is a well-annotated data resource of protein phosphorylation sites in eukaryotes.
PhaSepDB is a novel database that provides a collection of phase separation related proteins manually curated from publications and public database. In addition to curated proteins, PhaSepDB also pro ...
An End-to-End Deep Learning-Based Workflow for Biomedical Knowledge Graph Extraction, Optimization and Applications.
DiZyme open access resource for quantitative prediction of nanozyme catalytic activity
dbPSP (database of Phosphorylation Sites in Prokaryotes) is an updated resource for annotating protein phosphorylation sites (p-sites) in prokaryotes (bacteria and archaea).
Protein stability data
A database of 3D chromosome and genome structures reconstructed from Hi-C data. Bioinformatics, Data Mining, Machine Learning (BDM) Laboratory,. GSDB : Genome Structure Database.
A new expert system for drug-excipient compatibility evaluation.
The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-li ...
Optimized CRISPR guide RNA design for two high-fidelity Cas9 variants by deep learning | Core code for the DeepHF prediction tool | SpCas9 & Base Editor Efficiency Prediction | This tool provides guid ...
Model Zoo curates and provides a platform for deep learning researchers to easily find pre-trained models for a variety of platforms and uses.