Crop Ontology
Names
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Crop Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
CO
metasource: Fairsharing.org
version: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Crop Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
CO
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Crop Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
CO
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
The Crop Ontology project is a service of the Integrated Breeding Platform to harmonize the traits measured by breeders. Crop Ontology provides trait names and standard variables that annotate precisely the trait observation made. CO is to be used from data capture with fieldbooks to storing data files in databases and repositories.
Description
More detailed information about this field from each metasource.
The Crop Ontology project is a service of the Integrated Breeding Platform to harmonize the traits measured by breeders. Crop Ontology provides trait names and standard variables that annotate precisely the trait observation made. CO is to be used from data capture with fieldbooks to storing data files in databases and repositories.
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
http://www.cropontology.org/Webpage
More detailed information about this field from each metasource.
http://www.cropontology.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice
PMID: 22934074
metasource: Fairsharing.org
version: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature
PMID: 22476066
metasource: Fairsharing.org
version: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice
PMID: 22934074
metasource: Fairsharing.org
version: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature
PMID: 22476066
metasource: Fairsharing.org
version: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice
PubMed citations: 40.
40 articles citing: Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice
Breedbase: a digital ecosystem for modern plant breeding. PMID:35385099
Breeding for Economically and Environmentally Sustainable Wheat Varieties: An Integrated Approach from Genomics to Selection. PMID:35053148
Integrating Genomic and Phenomic Approaches to Support Plant Genetic Resources Conservation and Use. PMID:34834625
Quinoa Phenotyping Methodologies: An International Consensus. PMID:34579292
Opportunities and limits of controlled-environment plant phenotyping for climate response traits. PMID:34302493
Challenges for FAIR-compliant description and comparison of crop phenotype data with standardized controlled vocabularies. PMID:33991093
Capturing and Selecting Senescence Variation in Wheat. PMID:33936128
Extracting knowledge networks from plant scientific literature: potato tuber flesh color as an exemplary trait. PMID:33894758
Genetics and breeding for climate change in Orphan crops. PMID:33486565
Editorial: Phenotyping; From Plant, to Data, to Impact and Highlights of the International Plant Phenotyping Symposium - IPPS 2018. PMID:33343612
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS. PMID:33313522
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. PMID:33205138
High density genotype storage for plant breeding in the Chado schema of Breedbase. PMID:33175872
Recent Progress in Germplasm Evaluation and Gene Mapping to Enable Breeding of Drought-Tolerant Wheat. PMID:32849707
Document or Lose It-On the Importance of Information Management for Genetic Resources Conservation in Genebanks. PMID:32824806
WTO, an ontology for wheat traits and phenotypes in scientific publications. PMID:32634868
A Physio-Morphological Trait-Based Approach for Breeding Drought Tolerant Wheat. PMID:32582249
Cassava breeding and agronomy in Asia: 50 years of history and future directions. PMID:32523397
Enabling reusability of plant phenomic datasets with MIAPPE 1.1. PMID:32171029
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees. PMID:31892954
GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. PMID:31566222
Modernising breeding for orphan crops: tools, methodologies, and beyond. PMID:31256257
Review: New sensors and data-driven approaches-A path to next generation phenomics. PMID:31003608
BrAPI-an application programming interface for plant breeding applications. PMID:30903186
Computational aspects underlying genome to phenome analysis in plants. PMID:30500991
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PMID:30500839
Prioritising candidate genes causing QTL using hierarchical orthologous groups. PMID:30423067
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
Growing and cultivating the forest genomics database, TreeGenes. PMID:30239664
Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System. PMID:30152011
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. PMID:30115101
QTLTableMiner++: semantic mining of QTL tables in scientific articles. PMID:29801439
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. PMID:29220435
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. PMID:29186578
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Measures for interoperability of phenotypic data: minimum information requirements and formatting. PMID:27843484
Determining Phenological Patterns Associated with the Onset of Senescence in a Wheat MAGIC Mapping Population. PMID:27822218
EURISCO: The European search catalogue for plant genetic resources. PMID:27580718
MaizeGDB update: new tools, data and interface for the maize model organism database. PMID:26432828
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding. PMID:25428362 -
Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature
PubMed citations: 17.
17 articles citing: Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature
CerealsDB: A Whistle-Stop Tour of an Open Access SNP Resource. PMID:35037203
Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources. PMID:35037201
CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research. PMID:34961276
Challenges for FAIR-compliant description and comparison of crop phenotype data with standardized controlled vocabularies. PMID:33991093
Document or Lose It-On the Importance of Information Management for Genetic Resources Conservation in Genebanks. PMID:32824806
CerealsDB-new tools for the analysis of the wheat genome: update 2020. PMID:32754757
Enhancing Crop Domestication Through Genomic Selection, a Case Study of Intermediate Wheatgrass. PMID:32265968
Modeling Crop Genetic Resources Phenotyping Information Systems. PMID:31281323
Improving the interoperability of biomedical ontologies with compound alignments. PMID:29316968
Phenobook: an open source software for phenotypic data collection. PMID:28327910
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. PMID:27842607
Emerging semantics to link phenotype and environment. PMID:26713234
Where have all the crop phenotypes gone? PMID:23824246
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. PMID:23586394
The plant ontology as a tool for comparative plant anatomy and genomic analyses. PMID:23220694
Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice. PMID:22934074
Gaining confidence in cross-species annotation transfer: from simple molecular function to complex phenotypic traits. PMID:22319070
Tags:
Tags
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phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Tags
More detailed information about this field from each metasource.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: CO; Crop Ontology; DOI: https://doi.org/10.25504/FAIRsharing.wgfrmg; Last edited: Feb. 14, 2020, 5:13 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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