Biological SPatial Ontology
Names
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Biological SPatial Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
BSPO
metasource: Fairsharing.org
version: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
Spatial Ontology
metasource: Biontology / Bioportal
version: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
Names
More detailed information about this field from each metasource.
Biological SPatial Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
BSPO
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
Spatial Ontology
metasource: Biontology / Bioportalversion: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
Other names: BSPO, Spatial Ontology
Names
More detailed information about this field from each metasource.
Biological SPatial Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
BSPO
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
Spatial Ontology
metasource: Biontology / Bioportalversion: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
This ontology represents spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.
Description
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This ontology represents spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.
metasource: Biontology / Bioportalversion: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
Webpage:
http://bioportal.bioontology.org/ontologies/BSPOWebpage
More detailed information about this field from each metasource.
http://bioportal.bioontology.org/ontologies/BSPO
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
https://github.com/obophenotype/biological-spatial-ontology
metasource: Biontology / Bioportalversion: 2022-10-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/BSPO
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
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Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
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https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology
PMID: 25140222
metasource: Fairsharing.org
version: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology
PMID: 25140222
metasource: Fairsharing.org
version: FAIRsharing.org: BSPO; Biological SPatial Ontology; DOI: https://doi.org/10.25504/FAIRsharing.newa3z; Last edited: Feb. 13, 2020, 2:46 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology
PubMed citations: 16.
16 articles citing: Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries. PMID:31419946
Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. PMID:30918448
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. PMID:30576485
Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier. PMID:30532623
COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. PMID:29083911
The 'straight mouse': defining anatomical axes in 3D embryo models. PMID:28365728
Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources. PMID:27955641
PhenoImageShare: an image annotation and query infrastructure. PMID:27267125
MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. PMID:27076900
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PMID:26870952
Emerging semantics to link phenotype and environment. PMID:26713234
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. PMID:26500251
ZFIN, The zebrafish model organism database: Updates and new directions. PMID:26097180
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. PMID:25972520
OTO: Ontology Term Organizer. PMID:25887779
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