Other names: BIOLINK
A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations
A curated database for microbes across human body and their associations with health and diseases.
BioTopLite 2 (BTL2) is a simplified, high-level version of BioTop, a top-domain ontology that provides definitions for the foundational entities of biomedicine. BioTop imports BTL2 as its upper-level ...
Chemical Entities of Biological Interest (ChEBI) is a free dictionary that describes 'small’ chemical compounds. These compound includes distinct synthetic or natural atoms, molecules, ions, ion pair, ...
Database of protein Molecular Dynamics simulations, with 1800 trajectories representing different structural clusters of the PDB.
Genotype-phenotype associations
Genes, diseases, and pathways associated with PolyCystic Ovary Syndrome
REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database.
MVAont is about the description of Indian Mosquito Vectors and their Associations with Biocontrol Agents
NeuroML is a model description language developed in XML (extensible Markup Language) that was created to facilitate data archiving, data and model exchange, database creation, and model publication i ...
The Systems Biology Graphical Notation (SBGN) project is an effort to standardize the graphical notation used in maps of biological processes. The mission of SBGN project is to develop high quality, s ...
Microbe-disease associations
The Model Archive provides a stable archive for computational macro-molecular models published in the scientific literature. The model archive provides a unique stable accession code (DOI) for each de ...
Bioentities is a collection of resources for grounding biological entities from text and describing their hierarchical relationships, focusing on protein families and complexes.
A Database of Essential Genes Predicted Using Features From Interaction Networks.
The Kidney Tissue Atlas Ontology (KTAO) is an ontology that integrates kidney-related cell types, cell states, locations, gene markers, disease, etc., and their relations. KTAO is developed to suppo ...
A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.
This ontology covers the domain of social entities that are related to health care, such as demographic information (social entities for recording gender (but not sex) and marital status, for example) ...
Biological Pathway Taxonomy (BPT) - hierarchical taxonomy of cellular and molecular mechanisms, metabolic reactions, and diseases that can be shown as signaling pathways. BPT was created manually base ...
Medical Subject Headings is the National Library of Medicine - controlled vocabulary used for indexing articles for PubMed and other NLM databases.
A subset of ontology classes and properties for connecting rare disease data in the context of creating FAIR rare disease data 'at the source'. The aim is to facilitate data annotation at the source i ...