autoSNPdb
Implemented the SNP discovery software autoSNP within a relational database to enable the efficient mining of the identified polymorphisms and the detailed interrogation of the data. AutoSNP was selected because it does not require sequence trace files and is thus applicable to a broader range of species and datasets.
Description
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Implemented the SNP discovery software autoSNP within a relational database to enable the efficient mining of the identified polymorphisms and the detailed interrogation of the data. AutoSNP was selected because it does not require sequence trace files and is thus applicable to a broader range of species and datasets.
metasource: Fairsharing.orgversion: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Plant SNP discovery database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://autosnpdb.appliedbioinformatics.com.auWebpage
More detailed information about this field from each metasource.
http://autosnpdb.appliedbioinformatics.com.au
metasource: Fairsharing.orgversion: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://autosnpdb.appliedbioinformatics.com.au/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: autoSNPdb Acknowledgements, Requirements and DisclaimerLicence name
More detailed information about this field from each metasource.
autoSNPdb Acknowledgements, Requirements and Disclaimer
metasource: Fairsharing.orgversion: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
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http://autosnpdb.appliedbioinformatics.com.au/ackDis.html
metasource: Fairsharing.orgversion: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
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AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
PMID: 18854357
metasource: Fairsharing.org
version: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
PMID: 18854357
metasource: Fairsharing.org
version: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
PubMed citations: 18.
18 articles citing: AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
High-Throughput Genotyping Technologies in Plant Taxonomy. PMID:33301093
Functional Markers for Precision Plant Breeding. PMID:32640763
Genetic Analysis of High Protein Content in 'AC Proteus' Related Soybean Populations Using SSR, SNP, DArT and DArTseq Markers. PMID:31873115
A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array. PMID:28220206
Gene set based association analyses for the WSSV resistance of Pacific white shrimp Litopenaeus vannamei. PMID:28094323
Transcriptome Characterization and Functional Marker Development in Sorghum Sudanense. PMID:27152648
NABIC SNP: an integrated database for SNP markers. PMID:26339155
CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. PMID:26289427
Next generation characterisation of cereal genomes for marker discovery. PMID:24833229
Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP. PMID:24832230
Applications and challenges of next-generation sequencing in Brassica species. PMID:24062086
Accessing complex crop genomes with next-generation sequencing. PMID:22948437
Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance. PMID:22802718
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects. PMID:21545712
Statistical genetic issues for genome-wide association studies. PMID:21076502
An integrated database to enhance the identification of SNP markers for rice. PMID:20975922
Epistasis: obstacle or advantage for mapping complex traits? PMID:20865037
A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid Coffea arabica. PMID:20864545
Tags:
Tags
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gene
metasource: Fairsharing.org
version: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: autoSNPdb; autoSNPdb; DOI: https://doi.org/10.25504/FAIRsharing.2h8cxh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
gene single nucleotide polymorphism plant plant
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