Plant Promoter Database

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More detailed information about this field from each metasource. ×

Plant Promoter Database

metasource: Fairsharing.org
version: FAIRsharing.org: ppdb; Plant Promoter Database; DOI: https://doi.org/10.25504/FAIRsharing.7k8zh0; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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ppdb

metasource: Fairsharing.org
version: FAIRsharing.org: ppdb; Plant Promoter Database; DOI: https://doi.org/10.25504/FAIRsharing.7k8zh0; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:45.692230

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PPDB

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:45.692230

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Other names: ppdb, PPDB

Genome-wide plant promoter database for several plant species, including Arabidopsis thaliana, rice, poplar, and Physcomitrella patens.

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Publications

More detailed information about this field from each metasource. ×

ppdb: a plant promoter database
PMID: 17947329

metasource: Fairsharing.org
version: FAIRsharing.org: ppdb; Plant Promoter Database; DOI: https://doi.org/10.25504/FAIRsharing.7k8zh0; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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ppdb: plant promoter database version 3.0
PMID: 24194597

metasource: Fairsharing.org
version: FAIRsharing.org: ppdb; Plant Promoter Database; DOI: https://doi.org/10.25504/FAIRsharing.7k8zh0; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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http://dx.doi.org/10.1093/nar/gkt1027

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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A potential pesticides exposure index (PPEI) for developing countries: Applied in a transboundary basin
PMID: 34061455

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:45.692230

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• ppdb: a plant promoter database PubMed citations: 37.

  37 articles citing: ppdb: a plant promoter database

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  Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management. PMID:34721467

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  Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis. PMID:34650265

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  Dissecting the Role of Promoters of Pathogen-sensitive Genes in Plant Defense. PMID:33214765

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  Overexpression of VIRE2-INTERACTING PROTEIN2 in Arabidopsis regulates genes involved in Agrobacterium-mediated plant transformation and abiotic stresses. PMID:31534160

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  Infrastructures of systems biology that facilitate functional genomic study in rice. PMID:30874968

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  Understanding Leishmania parasites through proteomics and implications for the clinic. PMID:29717934

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  TSSPlant: a new tool for prediction of plant Pol II promoters. PMID:28082394

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  A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence. PMID:27462324

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  Synthetic biology to access and expand nature's chemical diversity. PMID:26876034

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  High CO2 concentration as an inductor agent to drive production of recombinant phytotoxic antimicrobial peptides in plant biofactories. PMID:26687131

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  Core Promoter Plasticity Between Maize Tissues and Genotypes Contrasts with Predominance of Sharp Transcription Initiation Sites. PMID:26628745

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  Temporal and spatial control of gene expression in horticultural crops. PMID:26504550

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  AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs. PMID:25972521

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  Characterization of a small constitutive promoter from Arabidopsis translationally controlled tumor protein (AtTCTP) gene for plant transformation. PMID:25410250

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  Production of phytotoxic cationic α-helical antimicrobial peptides in plant cells using inducible promoters. PMID:25387106

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  Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature. PMID:25080170

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  Synthetic circuit of inositol phosphorylceramide synthase in Leishmania : a chemical biology approach. PMID:24386012

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  A γ-glutamyl cyclotransferase protects Arabidopsis plants from heavy metal toxicity by recycling glutamate to maintain glutathione homeostasis. PMID:24214398

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  Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots. PMID:24205361

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  Characterization and identification of cis-regulatory elements in Arabidopsis based on single-nucleotide polymorphism information. PMID:24204023

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  ppdb: plant promoter database version 3.0. PMID:24194597

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  Utilization of transposable element mPing as a novel genetic tool for modification of the stress response in rice. PMID:24078785

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  PromoterCAD: Data-driven design of plant regulatory DNA. PMID:23766287

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  Using an ensemble of statistical metrics to quantify large sets of plant transcription factor binding sites. PMID:23578135

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  Intraspecific sequence variation and differential expression in starch synthase genes of Arabidopsis thaliana. PMID:23497496

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  An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development. PMID:22416142

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  AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana. PMID:22397531

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  Simple database to select promoters for plant transgenesis. PMID:21811802

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  EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis. PMID:21543728

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  Prediction of transcriptional regulatory elements for plant hormone responses based on microarray data. PMID:21349196

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  Identification and application of a rice senescence-associated promoter. PMID:20439547

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  Genomics and bioinformatics resources for crop improvement. PMID:20208064

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  A small intergenic region drives exclusive tissue-specific expression of the adjacent genes in Arabidopsis thaliana. PMID:19835620

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  Web-queryable large-scale data sets for hypothesis generation in plant biology. PMID:19401381

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  Silencing of a plant gene by transcriptional interference. PMID:19376832

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  GRASSIUS: a platform for comparative regulatory genomics across the grasses. PMID:18987217

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  In silico identification of short nucleotide sequences associated with gene expression of pollen development in rice. PMID:18835840
• ppdb: plant promoter database version 3.0 PubMed citations: 25.

  25 articles citing: ppdb: plant promoter database version 3.0

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  Sequence-based evaluation of promoter context for prediction of transcription start sites in Arabidopsis and rice. PMID:35484393

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  Optogenetic and Chemical Induction Systems for Regulation of Transgene Expression in Plants: Use in Basic and Applied Research. PMID:35163658

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  Three regions of the NIP5;1 promoter are required for expression in different cell types in Arabidopsis thaliana root. PMID:34753382

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  Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology. PMID:32819338

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  Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots. PMID:32024696

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  The HKT Transporter Gene from Arabidopsis, AtHKT1;1, Is Dominantly Expressed in Shoot Vascular Tissue and Root Tips and Is Mild Salt Stress-Responsive. PMID:31277362

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  Completion of the cytosolic post-chorismate phenylalanine biosynthetic pathway in plants. PMID:30604768

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  Dempster-Shafer Theory for the Prediction of Auxin-Response Elements (AuxREs) in Plant Genomes. PMID:30515394

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  Identification of Two Auxin-Regulated Potassium Transporters Involved in Seed Maturation. PMID:30037141

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  Prediction of auxin response elements based on data fusion in Arabidopsis thaliana. PMID:29936576

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  Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli. PMID:29764390

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  Combination of the Endogenous lhcsr1 Promoter and Codon Usage Optimization Boosts Protein Expression in the Moss Physcomitrella patens. PMID:29163577

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  Nucleotide patterns aiding in prediction of eukaryotic promoters. PMID:29141011

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  Prediction of bipartite transcriptional regulatory elements using transcriptome data of Arabidopsis. PMID:28158431

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  TSSPlant: a new tool for prediction of plant Pol II promoters. PMID:28082394

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  The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. PMID:27760805

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  In silico study on Arabidopsis BAG gene expression in response to environmental stresses. PMID:27002965

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  Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes. PMID:26959651

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  Bioinformatic landscapes for plant transcription factor system research. PMID:26719053

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  High CO2 concentration as an inductor agent to drive production of recombinant phytotoxic antimicrobial peptides in plant biofactories. PMID:26687131

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  The Responses of Arabidopsis Early Light-Induced Protein2 to Ultraviolet B, High Light, and Cold Stress Are Regulated by a Transcriptional Regulatory Unit Composed of Two Elements. PMID:26175515

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  SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression. PMID:25627216

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  Next-generation sequencing of genomic DNA fragments bound to a transcription factor in vitro reveals its regulatory potential. PMID:25534860

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  Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level. PMID:25428432

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  Production of phytotoxic cationic α-helical antimicrobial peptides in plant cells using inducible promoters. PMID:25387106
• http://dx.doi.org/10.1093/nar/gkt1027
• A potential pesticides exposure index (PPEI) for developing countries: Applied in a transboundary basin PubMed citations: 0.

  0 articles citing: A potential pesticides exposure index (PPEI) for developing countries: Applied in a transboundary basin

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More detailed information about this field from each metasource. ×

promoter

metasource: Fairsharing.org
version: FAIRsharing.org: ppdb; Plant Promoter Database; DOI: https://doi.org/10.25504/FAIRsharing.7k8zh0; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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transcription factor

metasource: Fairsharing.org
version: FAIRsharing.org: ppdb; Plant Promoter Database; DOI: https://doi.org/10.25504/FAIRsharing.7k8zh0; Last edited: Jan. 8, 2019, 1:20 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

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plant databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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general plant databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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agricultural science

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:45.692230

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toxicology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:45.692230

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plant biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:45.692230

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promoter transcription plant plant agricultural science toxicology plant biology