CHADO XML
Chado is a modular schema covering many aspects of biology, not just sequence data. Chado-XML has exactly the same scope as the Chado schema.
Description
More detailed information about this field from each metasource.
Chado is a modular schema covering many aspects of biology, not just sequence data. Chado-XML has exactly the same scope as the Chado schema.
metasource: Fairsharing.orgversion: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
http://gmod.org/wiki/Chado_XMLWebpage
More detailed information about this field from each metasource.
http://gmod.org/wiki/Chado_XML
metasource: Fairsharing.orgversion: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence:
Name: GNU Free Documentation LicenseLicence name
More detailed information about this field from each metasource.
GNU Free Documentation License
metasource: Fairsharing.orgversion: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence URL
More detailed information about this field from each metasource.
http://www.gnu.org/licenses/fdl-1.3.html
metasource: Fairsharing.orgversion: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Using Chado to store genome annotation data
PMID: 18428772
metasource: Fairsharing.org
version: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
Using Chado to store genome annotation data
PMID: 18428772
metasource: Fairsharing.org
version: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
-
Using Chado to store genome annotation data
PubMed citations: 20.
20 articles citing: Using Chado to store genome annotation data
CorkOakDB-The Cork Oak Genome Database Portal. PMID:33382885
LegumeIP V3: from models to crops-an integrative gene discovery platform for translational genomics in legumes. PMID:33166388
Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata. PMID:31960040
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees. PMID:31892954
SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines). PMID:31680133
FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes. PMID:30152809
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. PMID:26546515
Araport: the Arabidopsis information portal. PMID:25414324
GenoBase: comprehensive resource database of Escherichia coli K-12. PMID:25399415
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. PMID:22645565
Visualizing next-generation sequencing data with JBrowse. PMID:22411711
The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species. PMID:22250003
GeneDB--an annotation database for pathogens. PMID:22116062
Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens. PMID:22039101
Tripal: a construction toolkit for online genome databases. PMID:21959868
CycADS: an annotation database system to ease the development and update of BioCyc databases. PMID:21474551
Genomic information infrastructure after the deluge. PMID:20670392
Genome sequence of the pea aphid Acyrthosiphon pisum. PMID:20186266
The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes. PMID:19545381
VectorBase: a data resource for invertebrate vector genomics. PMID:19028744
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: CHADO XML; CHADO XML; DOI: https://doi.org/10.25504/FAIRsharing.wjwb5c; Last edited: April 27, 2021, 2:01 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Need help integrating and/or managing biomedical data?