BD5

BD5 is an open HDF5-based format for representing quantitative data of biological dynamics.

Description

More detailed information about this field from each metasource.

BD5 is an open HDF5-based format for representing quantitative data of biological dynamics.

metasource: Fairsharing.org
version: None

Webpage:

Publications:

Publications

More detailed information about this field from each metasource.

BD5: An open HDF5-based data format to represent quantitative biological dynamics data
PMID: 32785254

metasource: Fairsharing.org
version: None

Biological Dynamics Markup Language

Biological Dynamics Markup Language is an open unified format for representing quantitative data of biological dynamics. BDML can describe a wide variety of spatiotemporal dynamics of biological objec ...

SSBD: Systems Science of Biological Dynamics

SSBD is a database that collects and shares quantitative biological dynamics data, microscopy images, and software tools. SSBD provides a rich set of resources for analyzing quantitative biological da ...

Hierarchical Data Format

HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and comp ...

FASTA Sequence Format

FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes. The format also al ...

Ontology for Representing CDM Semantics

The Ontology for Representing CDM Semantics (ORCS) is an application ontology that was developed to transform common-data-model-based data into ontologically-based data such as RDF, RDF*, OWL2, or Ref ...

WDDD - Worm Developmental Dynamics Database

Worm Developmental Dynamics Database (WDDD) stores a collection of quantitative information about cell division dynamics in early Caenorhabditis elegans embryos with single genes silenced by RNA-media ...

Biological Observation Matrix Ontology

The BIOMO ontology maps the HDF5 based BIOM format (http://biom-format.org/) to OWL, offering a method to convert a BIOM file to RDF and therefore publish it as Linked Data

Ontology of Biological Attributes

A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.

Genotype Ontology

An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases.

Genetic Feature Format Ontology

An ontology to represent genome feature annotations in gff3 format.

Genome Variation Format

The Genome Variation Format (GVF) is a very simple file format for describing sequence alteration features at nucleotide resolution relative to a reference genome.

DNMSO

DNMSO is an ontology for representing de novo sequencing results from Tandem-MS data. For the identification and sequencing of proteins, mass spectrometry (MS) has become the tool of choice and as suc ...

Ontologized MIABIS

OMIABIS is an open-source ontology of biobank administration. OMIABIS stands for Ontologized MIABIS where MIABIS is the Minimum Information About BIobank data Sharing.

Wiggle Track Format

The wiggle (WIG) format is an older format for display of dense, continuous data such as GC percent, probability scores, and transcriptome data. The bigWig format is the recommended format for almost ...

ISA-TAB-Nano

ISA-TAB-Nano specifies the format for representing and sharing information about nanomaterials, small molecules and biological specimens along with their assay characterization data (including metadat ...

biotracks

Biotracks provides a standard format for cell migration tracking files and a series of converters from popular tracking sofware packages to the biotracks format, which is a specialization of the Frict ...

Chemotherapy Toxicities Ontology

OntoTox is an ontology designed to represent chemotherapy toxicities extracted from various data in Clinical Data Warehouses. OntoTox can integrate toxicities and grading information extracted from he ...

ENVS variables

Quantitative and qualitative variables describing environmental state

Xenobiotics Metabolism Database

XMetDB is an open access and open source database and web interface for the submission and retrieval of experimental metabolite data for drugs and other xenobiotics. It will also feature an open API f ...

OmicsDI XML format

XML Schema definition for the OmicsDI XML format.

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Webpage:

Publications:

Publications
More detailed information about this field from each metasource.

BD5: An open HDF5-based data format to represent quantitative biological dynamics data
PMID: 32785254
metasource: Fairsharing.org
version: None

More to explore:

1/20

Biological Dynamics Markup Language

SSBD: Systems Science of Biological Dynamics

Hierarchical Data Format

FASTA Sequence Format

Ontology for Representing CDM Semantics

WDDD - Worm Developmental Dynamics Database

Biological Observation Matrix Ontology

Ontology of Biological Attributes

Genotype Ontology

Genetic Feature Format Ontology

Genome Variation Format

DNMSO

Ontologized MIABIS

Wiggle Track Format

ISA-TAB-Nano

biotracks

Chemotherapy Toxicities Ontology

ENVS variables

Xenobiotics Metabolism Database

OmicsDI XML format

BD5

Webpage:

Publications: Publications More detailed information about this field from each metasource. × BD5: An open HDF5-based data format to represent quantitative biological dynamics data PMID: 32785254 metasource: Fairsharing.org version: None Close

More to explore:

1/20

Biological Dynamics Markup Language

SSBD: Systems Science of Biological Dynamics

Hierarchical Data Format

FASTA Sequence Format

Ontology for Representing CDM Semantics

WDDD - Worm Developmental Dynamics Database

Biological Observation Matrix Ontology

Ontology of Biological Attributes

Genotype Ontology

Genetic Feature Format Ontology

Genome Variation Format

DNMSO

Ontologized MIABIS

Wiggle Track Format

ISA-TAB-Nano

biotracks

Chemotherapy Toxicities Ontology

ENVS variables

Xenobiotics Metabolism Database

OmicsDI XML format

Publications:

Publications
More detailed information about this field from each metasource.

BD5: An open HDF5-based data format to represent quantitative biological dynamics data
PMID: 32785254
metasource: Fairsharing.org
version: None