Tag: model organisms, comparative genomics


Found 72 sources
Source Match ReputationScore*

Ensembl


Ensembl aims to provide a centralized resource for geneticists, molecular biologists and other researchers studying the genomes of our own species and other vertebrates and model organisms. Ensembl is one of several well known genome browsers for the ...
100%

Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource


MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. Data includes gene characterization, nomenclature, mapping, gene homo ...
70%

Ensembl Genomes


The Ensembl genome annotation system, developed jointly by EMBL-EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented b ...
60%

Reference Sequence Database


The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins.
57%

Mouse Phenome Database


Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public so ...
56%

Xenopus laevis and tropicalis biology and genomics resource


Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. It includes gene expression patterns that incorporate image data from the li ...
55%

Homologene


HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.
49%

Online GEne Essentiality database


Online GEne Essentiality database
45%

PhylomeDB


PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). Researchers are able to use this resource to visualise the history of genes with the available phylogentic trees and multiple sequence alignments.
45%

zfishbook


Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.
44%

Animal Quantitative Trait Loci (QTL) Database


The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped ...
44%

The Consensus CDS


The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of ge ...
43%

The Vertebrate Genome Annotation Database


The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual annotation of vertebrate finished genome sequence.
43%

AgBase


AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.
43%

European Mouse Mutant Archive


The European Mouse Mutant Archive (EMMA) is a non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. The laboratory mouse is the most important m ...
41%

Online Mendelian Inheritance in Animals


Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse).
41%

Newt-omics


A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from high throughput experiments. Newt-Omics aims to provide a comprehensive platform of expressed genes during tissue regeneration, including extensive ann ...
39%

IMPC


International Mouse Phenotyping Consortium: an encyclopaedia of mammalian gene function
39%

Bovine Genome Database


The Bovine Genome Database project is developed to support the efforts of bovine genomics researchers by providing data mining, genome navigation and annotation tools for the bovine reference genome based on the hereford cow, L1 Dominette 01449.
39%

Dog Genome SNP Database


Dog Genome SNP Database (DoGSD) is a data container for the variation information of dog/wolf genomes. It was designed and constructed as an SNPs detector and visualization tool to provide the research community a useful resource for the study of dog ...
38%

RhesusBase


A comprehensive online knowledgebase for the monkey research community.
37%

Eukaryotic Genes


euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, ...
36%

GenomeCRISPR


High-throughput screening using the CRISPR/Cas-9 system
35%

Chicken Variation Database


The chicken Variation Database (ChickVD) is an integrated information system for storage, retrieval, visualization and analysis of chicken variation data.
34%

HieranoiDB


Ortholog groups and trees for 66 proteomes inferred by Hieranoid 2
34%

Deciphering the Mechanisms of Developmental Disorders


Initiated in 2013, DMDD has the ambitious goal of identifying all embryonic lethal knockout lines made at the Wellcome Trust Sanger institute, through their work as a major centre for creation of individual mouse gene knockouts. DMDD uses a combinati ...
33%

Mousebook


Mutant mouse lines held at MRC Harwell
33%

RIKEN mammals


Integrated database of mammalian genomes, phenotypes, strains and cell lines
33%

MFunGD


MIPS mouse functional genomics database
32%

MUGEN mouse database


The MUGEN mouse database (MMdb) is a database of murine models of immune processes and immunological diseases.
32%

Pig Genomic Informatics System


The Pig Genomic Informatics System (PigGIS) presents accurate pig gene annotations in all sequenced genomic regions. It integrates various available pig sequence data, including 3.84 million whole-genome-shortgun (WGS) reads and 0.7 million Expressed ...
32%

Animal Genome Size Database


A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources.
30%

Genomicus


The Spirochetes Genome Browser
28%

PathBase


European mutant mice pathology database: histopathology photomicrographs and macroscopic images
28%

UniTrap


Unambiguous insertions in the same subgenic regions of annotated mouse genes
28%

Monarch Initiative


Human disease-related phenotypes in model organisms
28%

PEDE - Pig Expression Data Explorer


Full-length pig cDNA libraries and ESTs
28%

GenColors


The Spirochetes Genome Browser
26%

MouseNet


Functional network of mouse genes
26%

NHPRTR


Nonhuman Primate Reference Transcriptome Resource
26%

SpBase


Sea urchin Strongylocentrotus purpuratus genome database
26%

TISdb


A database of Translation Initiation Sites
26%

DBTMEE


DataBase of Transcriptome in Mouse Early Embryos
26%

Pseudofam


Eukaryotic pseudogenes assigned to different protein families
26%

WormQTLHD


Links from human disease to natural variation data in C. elegans
26%

PhyloPat


Phylogenetic patterns of genes from the Ensembl database
26%

CleanEST


Database server for cleansed EST libraries
26%

Gallus Gbrowse


Genomic information on chicken and other avian species
26%

Manteia


Embryonic development of the mouse, chicken, zebrafish and human
26%

OikoBase


A curated genome expression database of Oikopleura dioica
26%

SPEED


Searchable prototype experimental evolutionary database
26%

CistromeDB


ChIP-Seq and DNase-Seq data in human and mouse
26%

CRISPRz


CRISPR single guide RNAs to zebrafish genes
26%

GeneNest


Gene indices of human, mouse, zebrafish, Arabidopsis, and Drosophila
26%

PBmice


piggyBac transposon insertions in the mouse genome.
26%

SuperFly


spatio-temporal gene expression patterns indipteran embryos
26%

TAED - The Adaptive Evolution Database


A phylogeny-based tool for comparative genomics
26%

Narcisse


Conserved syntenies for various animal, plant and bacterial genomes
26%

OPTIC


Orthologous and Paralogous Transcripts in Clades
26%

H2DB


Heritability data for various species with trait-associated genomic loci
26%

X:MAP


Annotation and visualization of genome structure for Affymetrix exon array analysis
26%

UTGB/medaka


University of Tokyo Genome Browser of medaka fish (Oryzias latipes) genomic data
26%

Cre Transgenic Database


Cre transgenic mouse lines with links to corresponding publications and to contact information for requests.
26%

SNPSTR


The SNPSTR database contains the SNP-STR/microsatellite compound markers in the five model species, where sufficient SNP information exists in both of the NCBI and Ensembl databases. These species are human (Homo sapiens), mouse (Mus musculus), rat ( ...
26%

International Mouse Phenotyping Consortium Database


The International Mouse Phenotyping Consortium (IMPC) is an international effort by 19 research institutions to identify the function of every protein-coding gene in the mouse genome.The entire genome of many species has now been published and whole ...
26%

CORG - A database for COmparative Regulatory Genomics


Sequence conservation in non-coding, upstream regions of orthologous genes from man and mouse is likely to reflect common regulatory DNA sites. Motivated by this assumption we have delineated a catalogue of conserved non-coding sequence blocks and pr ...
26%

GenCC Database


The GenCC DB provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases. Curated gene-disease relationships are submitted by GenCC member organizations. The GenCC comprises organizations ...
26%

DBTGR


Tunicates are lower chordates that include among others the two ascidians Ciona intestinalis and Ciona savignyi. This subphylum is particularly interesting because it shares many developmental and physiological characteristics, as well as basic gene ...
26%

ABA - Ascidian Body Atlas


ABA (Ascidian Body Atlas) is a digital 3D atlas of ascidian embryo development and gene expression pattern. Our 3D embryo images were reconstructed from more than 3,000 high-resolution real images acquired by a confocal laser microscopy in different ...
26%

TreeFam


TreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families. ...
26%

MamPol


The Mammalia Polymorphism Database (1) is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Mammalia class grouped by name of organism and gene. It allows the search for any polymorphic set accordi ...
26%

EVOG


Overlapping genes are defined as a pair of genes whose transcripts are overlapped. Recently, many cases of overlapped genes have been investigated in various eukaryotic organisms; however, their origin and transcriptional control mechanism has not ye ...
26%

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