The catfish genome database (cBARBEL)

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The catfish genome database (cBARBEL)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:09.034047

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cbarbel

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:09.034047

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Other names: cbarbel

Online open-access database for genome biology of ictalurid catfish (Ictalurus spp.). cBARBEL provides BLAST-based, fuzzy and specific search functions, visualization of catfish linkage, physical and integrated maps, a catfish EST contig viewer with SNP information overlay, and GBrowse-based organization of catfish genomic data based on sequence similarity with zebrafish chromosomes.

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The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish
PMID: 20935046

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:09.034047

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• The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish PubMed citations: 10.

  10 articles citing: The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish

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  FishDB: an integrated functional genomics database for fishes. PMID:33203359

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  The Grass Carp Genomic Visualization Database (GCGVD): an informational platform for genome biology of grass carp. PMID:31592084

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  Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. PMID:26500251

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  Molecular cloning, sequencing and tissue expression of vasotocin and isotocin precursor genes from Ostariophysian catfishes: phylogeny and evolutionary considerations in teleosts. PMID:26029040

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  Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology. PMID:23342099

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  The innate immune-related genes in catfish. PMID:23203058

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  A consensus linkage map provides insights on genome character and evolution in common carp (Cyprinus carpio L.). PMID:23073608

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  Bioinformatic identification and validation of conservative microRNAs in Ictalurus punctatus. PMID:23053943

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  Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map. PMID:23050234

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  A pilot study for channel catfish whole genome sequencing and de novo assembly. PMID:22192763

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mapping

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:09.034047

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:09.034047

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:09.034047

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dna polymorphism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:09.034047

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physics

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mapping model organisms gene transcripts dna polymorphism physics