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SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Scotland

Summary of SARS-CoV-2 lineages and mutations

Description

More detailed information about this field from each metasource.

Summary of SARS-CoV-2 lineages and mutations

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Webpage:

https://www.healthdatagateway.org/dataset/cc1a15ea-1bca-42c5-9915-8e6bfd733d6e

Webpage

More detailed information about this field from each metasource.

https://www.healthdatagateway.org/dataset/cc1a15ea-1bca-42c5-9915-8e6bfd733d6e

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Licence:

Name: HDR UK Innovation Gateway Access

Licence name

More detailed information about this field from each metasource.

HDR UK Innovation Gateway Access

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

URL: https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

Licence URL

More detailed information about this field from each metasource.

https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Tags:

Tags
More detailed information about this field from each metasource.

Genome
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

COVID-19
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

NCS
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

National Core Study
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

genome covid-19 national core study

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SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - NI

Summary of SARS-CoV-2 lineages and mutations

SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - England

COVID-19 COG-UK Viral Genome (variant strain data)

SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Wales

The dataset provides information about SARS-CoV-2 variants of concern and variants under investigation in Wales. This includes phylogenetic and mutational information about samples.

COG-UK Viral Genome Sequences

COG-UK Consortium has published a dataset which contains over 20K SARS-CoV-2 viral genome sequences available as open access.

NCBI SARS-CoV

This Web resource provides data and information relevant to SARS coronavirus. It includes links to the most recent sequence data and publications, to other SARS related resources, and a pre-computed a ...

TRACK-COVID

SARS-CoV-2 virus stimulates a rapid antibody response in people with symptomatic and asymptomatic infection. Seroprevalence of SARS-CoV-2 antibodies in a population can serve as a useful measure of ex ...

T-CoV

A comprehensive portal of HLA-peptide interactions affected by SARS-CoV-2 mutations.

Sars-CoV-2 Immunity & REinfection EvaluatioN (SIREN)

Large-scale study testing blood samples and swabs obtained from healthcare workers who work in a clinical setting to see if infection with COVID-19 protects them from future episodes of infection.

SARSCOVIDB

New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection.

National Records of Scotland (NRS) - Stillbirth Data

All Registrations to the National Records of Scotland of stillbirths.

hCoronavirusesDB

A genetic and proteomic database for the SARS-CoV, MERS-CoV, and SARS-COV-2.

SGSS data for QResearch

QResearch GP data is linked to Second Generation Surveillance System (SGSS) data contains SARS-CoV-2 testing (swab samples, PCR test method) offered to those in hospital and NHS key workers (i.e. Pill ...

COVID-19 Wastewater data

Samples of wastewater are collected 7 days a week from sewage treatment plants across England. Samples are analysed to determine the number of gene copies of SARS-CoV-2 per litre using quantitative Po ...

Covid-19 Thesaurus

This bilingual thesaurus (French-English), developed at Inist-CNRS, covers the concepts from the emerging COVID-19 outbreak which reminds the past SARS coronavirus outbreak and Middle East coronavirus ...

CoV-Seq

CoV-Seq is a suite of tools and datasets for analysis and visualization of genomes of SARS-CoV-2, the virus that causes COVID-19. Sequences are collected from four major repositories: GISAID, NCBI, EM ...

COVID-19 Test Results (PATD)

Test results for COVID-19 tests.

CovidMine

CovidMine is an InterMine dedicated to COVID-19 / SARS-CoV-2 data which integrates confirmed Covid-19 cases, deaths, Sars-CoV-2 reference genome and nucleotide sequences from isolates deposited in Gen ...

SARS-CoV RNA SSS

SARS-CoV RNA SSS DATABASE is a database of the predicted RNA secondary structural sequences of six SARS coronavirus complete genomes which were sequenced and submitted to GenBank by the separate seque ...

National Records of Scotland (NRS) - Deaths Data

All registrations to the National Records of Scotland of deaths

CPRD GOLD SGSS

CPRD GOLD linked Second Generation Surveillance System (SGSS) data contains SARS-CoV-2 testing (swab samples, PCR test method) offered to those in hospital and NHS key workers (i.e. Pillar 1) and incl ...

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine