Patient-Derived tumor Xenograft Finder
Names
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Patient-Derived tumor Xenograft Finder
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
PDX Finder
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
PDX-Finder
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Patients-derived tumor xenograft finder
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Patient-Derived tumor Xenograft Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
PDX Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
PDX-Finder
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Patients-derived tumor xenograft finder
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Other names: PDX Finder, PDX-Finder, Patients-derived tumor xenograft finder
Names
More detailed information about this field from each metasource.
Patient-Derived tumor Xenograft Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
PDX Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
PDX-Finder
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Patients-derived tumor xenograft finder
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalogue of PDX models available for researchers across distributed repository databases. Integrated views are provided for histopathological image data, molecular classification of tumors, host mouse strain metadata, tumor genomic data and metrics on tumor response to chemotherapeutics. The data model for PDX Finder is based on the minimal information standard for PDX models developed in collaboration with a broad range of stakeholders who create and/or use PDX models in basic and pre-clinical cancer research.
Description
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PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalogue of PDX models available for researchers across distributed repository databases. Integrated views are provided for histopathological image data, molecular classification of tumors, host mouse strain metadata, tumor genomic data and metrics on tumor response to chemotherapeutics. The data model for PDX Finder is based on the minimal information standard for PDX models developed in collaboration with a broad range of stakeholders who create and/or use PDX models in basic and pre-clinical cancer research.
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Patients-derived tumor xenograft (PDX) mouse models are an important oncology research platform to study tumor evolution, drug response and personalised medicine approaches.
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Webpage:
http://www.pdxfinder.orgWebpage
More detailed information about this field from each metasource.
http://www.pdxfinder.org
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://www.pdxfinder.org/
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Licence:
Name: EMBL-EBI Terms of UseLicence name
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EMBL-EBI Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
other
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Licence URL
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http://www.ebi.ac.uk/about/terms-of-use
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://www.jax.org/terms-of-use
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
PDX Finder: A portal for patient-derived tumor xenograft model discovery
PMID: 30535239
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
PDX Finder: A portal for patient-derived tumor xenograft model discovery
PMID: 30535239
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
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PDX Finder: A portal for patient-derived tumor xenograft model discovery
PubMed citations: 36.
36 articles citing: PDX Finder: A portal for patient-derived tumor xenograft model discovery
CombPDX: a unified statistical framework for evaluating drug synergism in patient-derived xenografts. PMID:35906256
Theranostic Potentials of Gold Nanomaterials in Hematological Malignancies. PMID:35804818
Mass spectrometry-based draft of the mouse proteome. PMID:35710609
Preclinical models of epithelial ovarian cancer: practical considerations and challenges for a meaningful application. PMID:35705879
Correlation between Patient-Derived Xenograft Modeling and Prognosis in Osteosarcoma. PMID:35538733
Immune cell infiltration pattern in non-small cell lung cancer PDX models is a model immanent feature and correlates with a distinct molecular and phenotypic make-up. PMID:35483746
PDXNet portal: patient-derived Xenograft model, data, workflow and tool discovery. PMID:35475145
Biomimetic hydrogel supports initiation and growth of patient-derived breast tumor organoids. PMID:35304464
The EurOPDX Data Portal: an open platform for patient-derived cancer xenograft data sharing and visualization. PMID:35193494
Zebrafish patient-derived xenograft models predict lymph node involvement and treatment outcome in non-small cell lung cancer. PMID:35139880
Moving pan-cancer studies from basic research toward the clinic. PMID:35121865
Multi-tumor analysis of cancer-stroma interactomes of patient-derived xenografts unveils the unique homeostatic process in renal cell carcinomas. PMID:35079698
Establishment and characterization of NCC-DMM1-C1, a novel patient-derived cell line of desmoplastic malignant pleural mesothelioma. PMID:35069873
BAG3 induces α-SMA expression in human fibroblasts and its over-expression correlates with poorer survival in fibrotic cancer patients. PMID:34741483
TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response. PMID:34534350
Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidatesfor targeted treatment. PMID:34429404
Machine learning in the prediction of cancer therapy. PMID:34377366
The Application Progress of Patient-Derived Tumor Xenograft Models After Cholangiocarcinoma Surgeries. PMID:34367944
Discovery and prioritization of variants and genes for kidney function in >1.2 million individuals. PMID:34272381
Basic principles of biobanking: from biological samples to precision medicine for patients. PMID:34255145
Patient-derived tumor xenograft and organoid models established from resected pancreatic, duodenal and biliary cancers. PMID:34011980
Preclinical In Vivo Modeling of Pediatric Sarcoma-Promises and Limitations. PMID:33918045
Patient Derived Xenografts for Genome-Driven Therapy of Osteosarcoma. PMID:33671173
Patient-derived organoids and orthotopic xenografts of primary and recurrent gliomas represent relevant patient avatars for precision oncology. PMID:33009951
Current status and future outlook for patient-derived cancer models from a rare cancer research perspective. PMID:32986888
PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models. PMID:32810235
Establishment and characterization of NCC-ASPS1-C1: a novel patient-derived cell line of alveolar soft-part sarcoma. PMID:32648033
NOTCH1 activation compensates BRCA1 deficiency and promotes triple-negative breast cancer formation. PMID:32591500
Innovations, challenges, and minimal information for standardization of humanized mice. PMID:32578942
Current status and perspectives of patient-derived rare cancer models. PMID:32537685
Impact of the Injection Site on Growth Characteristics, Phenotype and Sensitivity towards Cytarabine of Twenty Acute Leukaemia Patient-Derived Xenograft Models. PMID:32466316
Patient-Derived Orthotopic Xenograft models in gastric cancer: a systematic review. PMID:32253687
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data. PMID:32142370
Harnessing big 'omics' data and AI for drug discovery in hepatocellular carcinoma. PMID:31900465
Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research. PMID:31287543
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657
Tags:
Tags
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cancer
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
disease
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
histology
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
model organism
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
patient care
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
tumor
metasource: Fairsharing.org
version: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
chemotherapeutics
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
drug
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
histopathology
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
medications
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
tumor histology
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
cancer
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
disease
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
histology
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
model organism
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
patient care
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
tumor
metasource: Fairsharing.orgversion: FAIRsharing.org: PDX Finder; Patient-Derived tumor Xenograft Finder; DOI: https://doi.org/10.25504/FAIRsharing.j3y6a0; Last edited: Feb. 22, 2021, 8:36 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
chemotherapeutics
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
drug
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
histopathology
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
medications
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
tumor histology
metasource: re3data.orgversion: re3data.org: PDX Finder; editing status 2021-08-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHT last accessed: 2022-11-04
cancer disease histology model organism patient care tumor chemotherapeutics drug genomics histopathology medications tumor histology
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