University of Minnesota Biocatalysis/Biodegradation Database
Names
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University of Minnesota Biocatalysis/Biodegradation Database
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
EAWAG Biocatalysis/Biodegradation Database
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
EAWAG-BBD
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
UM-BBD
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
um-bbd
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
Names
More detailed information about this field from each metasource.
University of Minnesota Biocatalysis/Biodegradation Database
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
EAWAG Biocatalysis/Biodegradation Database
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
EAWAG-BBD
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
UM-BBD
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
um-bbd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
Other names: EAWAG Biocatalysis/Biodegradation Database, EAWAG-BBD, UM-BBD, um-bbd
Names
More detailed information about this field from each metasource.
University of Minnesota Biocatalysis/Biodegradation Database
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
EAWAG Biocatalysis/Biodegradation Database
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
EAWAG-BBD
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
UM-BBD
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
um-bbd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
This database contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the EAWAG-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology.
Description
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This database contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the EAWAG-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology.
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on compounds, enzymes, reactions and microorganism entries. It includes a Biochemical Periodic Table (UM-BPT) and a rule-based Pathway Prediction System (UM-PPS) that predicts plausible pathways for microbial degradation of organic compounds. UM-BBD compound data are contributed to PubChem and ChemSpider, the public chemical databases.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
Webpage:
http://eawag-bbd.ethz.ch/Webpage
More detailed information about this field from each metasource.
http://eawag-bbd.ethz.ch/
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
http://eawag-bbd.ethz.ch/aboutBBD.html
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
Licence:
Name: CopyrightsLicence name
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Copyrights
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
Licence URL
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http://eawag-bbd.ethz.ch/index.html
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
Publications:
Publications
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The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
PMID: 19767608
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
Publications
More detailed information about this field from each metasource.
The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
PMID: 19767608
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
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The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
PubMed citations: 55.
55 articles citing: The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
Analysis of Biodegradation of the Synthetic Pyrethroid Cypermethrin by Beauveria bassiana. PMID:34982241
Utilizing a degradation prediction pathway system to understand how a novel methacrylate derivative polymer with flipped external ester groups retains physico-mechanical properties following esterase exposure. PMID:34933759
A novel Bacillus ligniniphilus catechol 2,3-dioxygenase shows unique substrate preference and metal requirement. PMID:34907211
"Microbial Wars" in a Stirred Tank Bioreactor: Investigating the Co-Cultures of Streptomyces rimosus and Aspergillus terreus, Filamentous Microorganisms Equipped With a Rich Arsenal of Secondary Metabolites. PMID:34660550
Computational Approaches for the Prediction of Environmental Transformation Products: Chlorination of Steroidal Enones. PMID:34637294
Analysis of Phenol Biodegradation in Antibiotic and Heavy Metal Resistant Acinetobacter lwoffii NL1. PMID:34566929
Constructing xenobiotic maps of metabolism to predict enzymes catalyzing metabolites capable of binding to DNA. PMID:34548010
Myco-remediation of Chlorinated Pesticides: Insights Into Fungal Metabolic System. PMID:34294989
Methodological Advances to Study Contaminant Biotransformation: New Prospects for Understanding and Reducing Environmental Persistence? PMID:34278380
Herbicide bioremediation: from strains to bacterial communities. PMID:33392402
SkinBug: an artificial intelligence approach to predict human skin microbiome-mediated metabolism of biotics and xenobiotics. PMID:33385118
Combining In Silico Tools with Multicriteria Analysis for Alternatives Assessment of Hazardous Chemicals: Accounting for the Transformation Products of decaBDE and Its Alternatives. PMID:33381962
Concomitant prediction of environmental fate and toxicity of chemical compounds. PMID:33376807
Complete genome reveals genetic repertoire and potential metabolic strategies involved in lignin degradation by environmental ligninolytic Klebsiella variicola P1CD1. PMID:33351813
BTEX biodegradation by Bacillus amyloliquefaciens subsp. plantarum W1 and its proposed BTEX biodegradation pathways. PMID:33060819
Microbial Composition and Functional Diversity Differ Across Urban Green Infrastructure Types. PMID:32582043
Omics Approaches to Pesticide Biodegradation. PMID:32078006
Functional Characterization and Genomic Analysis of the Chlorantraniliprole-Degrading Strain Pseudomonas Sp. GW13. PMID:31757031
Factors affecting intake, metabolism and health benefits of phenolic acids: do we understand individual variability? PMID:31115680
Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites. PMID:30910961
Biodegradation of naphthalene, BTEX, and aliphatic hydrocarbons by Paraburkholderia aromaticivorans BN5 isolated from petroleum-contaminated soil. PMID:30696831
BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification. PMID:30612223
Dietary Exposure to the Environmental Chemical, PFOS on the Diversity of Gut Microbiota, Associated With the Development of Metabolic Syndrome. PMID:30405595
Bioprospecting for Genes Encoding Hydrocarbon-Degrading Enzymes from Metagenomic Samples Isolated from Northern Adriatic Sea Sediments. PMID:30228802
Taxon-Driven Functional Shifts Associated with Storm Flow in an Urban Stream Microbial Community. PMID:29976643
Understanding and Designing the Strategies for the Microbe-Mediated Remediation of Environmental Contaminants Using Omics Approaches. PMID:29915565
A review of computational tools for design and reconstruction of metabolic pathways. PMID:29552648
HMDB 4.0: the human metabolome database for 2018. PMID:29140435
Monitoring and modeling 4-chlorophenol biodegradation kinetics by phenol-acclimated activated sludge by using open respirometry. PMID:28726229
The gut microbiota: a major player in the toxicity of environmental pollutants? PMID:28721242
Analysis of EAWAG-BBD pathway prediction system for the identification of malathion degrading microbes. PMID:28584447
Literature information in PubChem: associations between PubChem records and scientific articles. PMID:27293485
SensiPath: computer-aided design of sensing-enabling metabolic pathways. PMID:27106061
PROXIMAL: a method for Prediction of Xenobiotic Metabolism. PMID:26695483
enviPath--The environmental contaminant biotransformation pathway resource. PMID:26582924
MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. PMID:26527720
Genome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition. PMID:26248853
Predicting drug metabolism: experiment and/or computation? PMID:25907346
Metabolic pathway predictions for metabolomics: a molecular structure matching approach. PMID:25668446
The evolution of new enzyme function: lessons from xenobiotic metabolizing bacteria versus insecticide-resistant insects. PMID:25567970
Environmental designer drugs: when transformation may not eliminate risk. PMID:25216024
Land use type significantly affects microbial gene transcription in soil. PMID:24553913
Network-based approaches in drug discovery and early development. PMID:24025802
In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics. PMID:23991755
Metagenome reveals potential microbial degradation of hydrocarbon coupled with sulfate reduction in an oil-immersed chimney from Guaymas Basin. PMID:23785357
Taxonomic profiling and metagenome analysis of a microbial community from a habitat contaminated with industrial discharges. PMID:23728164
Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas. PMID:23607266
Comparative genomic analysis and benzene, toluene, ethylbenzene, and o-, m-, and p-xylene (BTEX) degradation pathways of Pseudoxanthomonas spadix BD-a59. PMID:23160122
Developing a metagenomic view of xenobiotic metabolism. PMID:22902524
Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides. PMID:22396667
Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms. PMID:22339582
Ring-cleaving dioxygenases with a cupin fold. PMID:22287012
MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases. PMID:22233419
The University of Minnesota Pathway Prediction System: multi-level prediction and visualization. PMID:21486753
PathPred: an enzyme-catalyzed metabolic pathway prediction server. PMID:20435670
Tags:
Tags
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analytical chemistry
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
biodegradation
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
biotechnology
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
cheminformatics
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
hydrology
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
life sciences
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
molecular biology
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
thermodynamics
metasource: re3data.org
version: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
enzymes
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
microbiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.985597
Tags
More detailed information about this field from each metasource.
analytical chemistry
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
biodegradation
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
biotechnology
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
cheminformatics
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
hydrology
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
life sciences
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
molecular biology
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
thermodynamics
metasource: re3data.orgversion: re3data.org: University of Minnesota Biocatalysis/Biodegradation Database; editing status 2018-12-07; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33D0V last accessed: 2022-11-04
enzymes
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
microbiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.985597
analytical chemistry biodegradation biotechnology cheminformatics hydrology life sciences molecular biology thermodynamics enzyme molecular interactions, pathways and networks model organisms microbiology
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