SNPedia
Names
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SNPedia
metasource: Fairsharing.org
version: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
snpedia
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
Names
More detailed information about this field from each metasource.
SNPedia
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
snpedia
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
Names
More detailed information about this field from each metasource.
SNPedia
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
snpedia
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
SNPedia is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). Curation occurs through editorial, community/user, and semi-automated processes.
Description
More detailed information about this field from each metasource.
SNPedia is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). Curation occurs through editorial, community/user, and semi-automated processes.
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Wiki on SNPs and genome annotation
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Wiki investigating human genetics. We share information about the effects of variations in DNA, citing peer-reviewed scientific publications. It is used by Promethease to analyze and help explain your DNA.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
Webpage:
http://SNPedia.comWebpage
More detailed information about this field from each metasource.
http://SNPedia.com
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.SNPedia.com
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://www.snpedia.com/index.php/SNPedia
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
Publications:
Publications
More detailed information about this field from each metasource.
SNPedia: a wiki supporting personal genome annotation, interpretation and analysis
PMID: 22140107
metasource: Fairsharing.org
version: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
http://dx.doi.org/10.1093/nar/GKR798
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
SNPedia: a wiki supporting personal genome annotation, interpretation and analysis
PMID: 22140107
metasource: Fairsharing.org
version: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
http://dx.doi.org/10.1093/nar/GKR798
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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SNPedia: a wiki supporting personal genome annotation, interpretation and analysis
PubMed citations: 92.
92 articles citing: SNPedia: a wiki supporting personal genome annotation, interpretation and analysis
Whole-Genome Sequencing and Genomic Variant Analysis of Kazakh Individuals. PMID:35899193
Pharmacogenetics of Praziquantel Metabolism: Evaluating the Cytochrome P450 Genes of Zimbabwean Patients During a Schistosomiasis Treatment. PMID:35754834
Bioarchaeological evidence of one of the earliest Islamic burials in the Levant. PMID:35672445
Prediction and analysis of functional RNA structures within the integrative genomics viewer. PMID:35047817
Common Genetic Aberrations Associated with Metabolic Interferences in Human Type-2 Diabetes and Acute Myeloid Leukemia: A Bioinformatics Approach. PMID:34502231
How a Paleogenomic Approach Can Provide Details on Bioarchaeological Reconstruction: A Case Study from the Globular Amphorae Culture. PMID:34208224
The Human Salivary Proteome Wiki: A Community-Driven Research Platform. PMID:34032471
Clinical pharmacogenomics in action: design, assessment and implementation of a novel pharmacogenetic panel supporting drug selection for diseases of the central nervous system (CNS). PMID:33858454
Re-analysis of Genetic Risks for Chronic Fatigue Syndrome From 23andMe Data Finds Few Remain. PMID:33816394
Distinct placental molecular processes associated with early-onset and late-onset preeclampsia. PMID:33754042
Fast searches of large collections of single-cell data using scfind. PMID:33649586
GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline. PMID:33193602
Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers. PMID:33124145
Genetic mutations associated with susceptibility to perioperative complications in a longitudinal biorepository with integrated genomic and electronic health records. PMID:32891412
Personal Health Information Inference Using Machine Learning on RNA Expression Data from Patients With Cancer: Algorithm Validation Study. PMID:32773372
Impute.me: An Open-Source, Non-profit Tool for Using Data From Direct-to-Consumer Genetic Testing to Calculate and Interpret Polygenic Risk Scores. PMID:32714365
MAGPEL: an autoMated pipeline for inferring vAriant-driven Gene PanEls from the full-length biomedical literature. PMID:32703994
Global Comparison of Changes in the Number of Test-Positive Cases and Deaths by Coronavirus Infection (COVID-19) in the World. PMID:32570833
CRISPRi-mediated functional analysis of lung disease-associated loci at non-coding regions. PMID:32500120
The Personal Genome Project-UK, an open access resource of human multi-omics data. PMID:31672996
Genomic Prediction of 16 Complex Disease Risks Including Heart Attack, Diabetes, Breast and Prostate Cancer. PMID:31653892
PhenoModifier: a genetic modifier database for elucidating the genetic basis of human phenotypic variation. PMID:31642469
NUMT Confounding Biases Mitochondrial Heteroplasmy Calls in Favor of the Reference Allele. PMID:31612134
A machine-compiled database of genome-wide association studies. PMID:31350405
VIPdb, a genetic Variant Impact Predictor Database. PMID:31283070
Mind the gap: resources required to receive, process and interpret research-returned whole genome data. PMID:31161416
SNP genotype calling and quality control for multi-batch-based studies. PMID:31062262
Genetic Variations and Precision Medicine. PMID:31019429
Blood-based analysis of type-2 diabetes mellitus susceptibility genes identifies specific transcript variants with deregulated expression and association with disease risk. PMID:30728419
Personal Genome Project UK (PGP-UK): a research and citizen science hybrid project in support of personalized medicine. PMID:30482208
The UCSC Genome Browser database: 2019 update. PMID:30407534
RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatment. PMID:30376049
Whole genome sequencing identifies high-impact variants in well-known pharmacogenomic genes. PMID:30214008
DES-Mutation: System for Exploring Links of Mutations and Diseases. PMID:30190574
CATCH-KB: Establishing a Pharmacogenomics Variant Repository for Chemotherapy-Induced Cardiotoxicity. PMID:29888066
Pharmacogenomic Approaches for Automated Medication Risk Assessment in People with Polypharmacy. PMID:29888060
Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies. PMID:29884306
Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks. PMID:29504915
Consumer use and response to online third-party raw DNA interpretation services. PMID:29471590
Inferring genetic origins and phenotypic traits of George Bähr, the architect of the Dresden Frauenkirche. PMID:29391530
Alternative splicing regulation in tumor necrosis factor-mediated inflammation. PMID:29113151
LiverWiki: a wiki-based database for human liver. PMID:29029599
RDFIO: extending Semantic MediaWiki for interoperable biomedical data management. PMID:28870259
Third party interpretation of raw genetic data: an ethical exploration. PMID:28832567
Impact of Sixteen Established Pancreatic Cancer Susceptibility Loci in American Jews. PMID:28754795
TNF-α -308 A allele is associated with an increased risk of distant metastasis in rectal cancer patients from Southwestern China. PMID:28575042
SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature. PMID:28388928
DNA Compass: a secure, client-side site for navigating personal genetic information. PMID:28334237
Disentangling genetic and environmental risk factors for individual diseases from multiplex comorbidity networks. PMID:28008973
Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia. PMID:27570653
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki. PMID:27402679
High-performance web services for querying gene and variant annotation. PMID:27154141
Text mining for precision medicine: automating disease-mutation relationship extraction from biomedical literature. PMID:27121612
The Association between Gene-Environment Interactions and Diseases Involving the Human GST Superfamily with SNP Variants. PMID:27043589
Wikidata as a semantic framework for the Gene Wiki initiative. PMID:26989148
GWASdb v2: an update database for human genetic variants identified by genome-wide association studies. PMID:26615194
PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. PMID:26587054
Human genotype-phenotype databases: aims, challenges and opportunities. PMID:26553330
Crowdsourced direct-to-consumer genomic analysis of a family quartet. PMID:26547235
Plasma levels of growth-related oncogene (CXCL1-3) associated with fibrosis and platelet counts in HCV-infected patients. PMID:26314558
Tumour Necrosis Factor-α Gene Polymorphism Is Associated with Metastasis in Patients with Triple Negative Breast Cancer. PMID:26165253
Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. PMID:25880555
The audacity of interpretation: Protecting patients or piling on? PMID:25621201
Incorporation of personal single nucleotide polymorphism (SNP) data into a national level electronic health record for disease risk assessment, part 1: an overview of requirements. PMID:25599712
Pharmacogenetics of drug-metabolizing enzymes in US Hispanics. PMID:25431893
Databases for lncRNAs: a comparative evaluation of emerging tools. PMID:25323317
A probabilistic model to predict clinical phenotypic traits from genome sequencing. PMID:25188385
The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events. PMID:24963371
The application of network label propagation to rank biomarkers in genome-wide Alzheimer's data. PMID:24731236
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. PMID:24667040
openSNP--a crowdsourced web resource for personal genomics. PMID:24647222
Low budget analysis of Direct-To-Consumer genomic testing familial data. PMID:24627758
Disentangling public participation in science and biomedicine. PMID:24479693
Rare coding variants and breast cancer risk: evaluation of susceptibility Loci identified in genome-wide association studies. PMID:24470074
The case for the continuing use of the revised Cambridge Reference Sequence (rCRS) and the standardization of notation in human mitochondrial DNA studies. PMID:24304692
GWAS Central: a comprehensive resource for the comparison and interrogation of genome-wide association studies. PMID:24301061
RiceWiki: a wiki-based database for community curation of rice genes. PMID:24136999
Systematic pharmacogenomics analysis of a Malay whole genome: proof of concept for personalized medicine. PMID:24009664
Towards precision medicine: advances in computational approaches for the analysis of human variants. PMID:23962656
MiST: a new approach to variant detection in deep sequencing datasets. PMID:23828039
Long noncoding RNAs and the genetics of cancer. PMID:23660942
A genome blogger manifesto. PMID:23587446
Community intelligence in knowledge curation: an application to managing scientific nomenclature. PMID:23451119
Phenotype prediction from genome-wide association studies: application to smoking behaviors. PMID:23281841
H2DB: a heritability database across multiple species by annotating trait-associated genomic loci. PMID:23193255
PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants. PMID:23161682
Sequencing and analysis of a South Asian-Indian personal genome. PMID:22938532
A high-coverage genome sequence from an archaic Denisovan individual. PMID:22936568
WikiGWA: an open platform for collecting and using genome-wide association results. PMID:22929026
VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era. PMID:22618869
A functional single-nucleotide polymorphism in the promoter of the gene encoding interleukin 6 is associated with susceptibility to tuberculosis. PMID:22457277
Making your database available through Wikipedia: the pros and cons. PMID:22144683 - http://dx.doi.org/10.1093/nar/GKR798
Tags:
Tags
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curated information
metasource: Fairsharing.org
version: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genotype
metasource: Fairsharing.org
version: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general polymorphism databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genetic variation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
dna polymorphism
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
genetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
human genetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:36.317550
Tags
More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genotype
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: SNPedia; SNPedia; DOI: https://doi.org/10.25504/FAIRsharing.29zsb8; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general polymorphism databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genetic variation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
dna polymorphism
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
genetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
human genetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:36.317550
polymorphism genotype single nucleotide polymorphism human genes and diseases polymorphism genetic variation genotype and phenotype dna polymorphism genetics human genetics
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