PDBSite

Description

More detailed information about this field from each metasource.

3D structure of protein functional sites

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

SuperSite

Dictionary of binding sites in proteins

CoPS

Comprehensive peptide signature database

ProTeus

Signature sequences at the protein N- and C-termini

SitEx

Projections of protein functional Sites on Exons

Minimotif Miner

Search tools for short functional motifs involved in posttranslational modifications, binding to other proteins, nucleic acids, or small molecules

NPRD - Nucleosome Positioning Region Database

Nucleosome positioning region database

eF-site - Electrostatic surface of Functional site

Electrostatic potentials and hydrophobic properties of the active sites

mutLBSgeneDB

Mutations in Ligand Binding Sites gene DataBase

MeMotif

Linear motifs in alpha-helical transmembrane proteins

PHOSIDA

Phosphorylation sites in various species identified by mass spectrometry

PRIDB

Protein-RNA Interface Database

PROSITE

PROSITE is a database of protein families and domains. PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles t ...

MimoDB

Mimotope database, active site-mimicking peptides selected from phage-display libraries

O-GLYCBASE

O-GLYCBASE is a database of glycoproteins with O-linked and C-linked glycosylation sites. Entries with at least one experimentally verified glycosylation site have been compiled from protein sequence ...

Integrated resource of protein families, domains and functional sites

InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this ...

NBDB

NBDB database provides profiles of Elementary Functional Loops (EFLs) involved in binding of nucleotide-containing ligands. Each EFL in form of a PSSM (position-specific scoring matrix) profile is com ...

PolyQ

Polyglutamine Repeats in Proteins

PhosphoSite Plus

PhosphoSite Plus provides extensive information on mammalian post-translational modifications (PTMs). The resource supersedes PhosphoSite a mammalian protein database that provides information about i ...

FireDB

fireDB is a database of Protein Data Bank structures, ligands and annotated functional site residues. The database can be accessed by PDB codes or UniProt accession numbers as well as keywords.

ASC - Active Sequence Collection

ASC (Active Sequences Collection) is a database of short amino acid sequences with known biological activity. The current version is substantially improved as compared to the previous release; it now ...

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