Metabolomics Workbench
Names
More detailed information about this field from each metasource.
Metabolomics Workbench
metasource: Fairsharing.org
version: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
MW
metasource: Fairsharing.org
version: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
UCSD Metabolomics Workbench
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Metabolomics Workbench
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
MW
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
UCSD Metabolomics Workbench
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
Other names: MW, UCSD Metabolomics Workbench
Names
More detailed information about this field from each metasource.
Metabolomics Workbench
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
MW
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
UCSD Metabolomics Workbench
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
The Metabolomics Workbench serves as a national and international repository for metabolomics data and metadata and provides analysis tools and access to metabolite standards, protocols, tutorials, training, and more.
Description
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The Metabolomics Workbench serves as a national and international repository for metabolomics data and metadata and provides analysis tools and access to metabolite standards, protocols, tutorials, training, and more.
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Data repository for metabolomics data and metadata, metabolite standards, protocols, analysis tools, tutorials and training
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
With the creation of the Metabolomics Data Repository managed by Data Repository and Coordination Center (DRCC), the NIH acknowledges the importance of data sharing for metabolomics. Metabolomics represents the systematic study of low molecular weight molecules found in a biological sample, providing a "snapshot" of the current and actual state of the cell or organism at a specific point in time. Thus, the metabolome represents the functional activity of biological systems. As with other ‘omics’, metabolites are conserved across animals, plants and microbial species, facilitating the extrapolation of research findings in laboratory animals to humans. Common technologies for measuring the metabolome include mass spectrometry (MS) and nuclear magnetic resonance spectroscopy (NMR), which can measure hundreds to thousands of unique chemical entities. Data sharing in metabolomics will include primary raw data and the biological and analytical meta-data necessary to interpret these data. Through cooperation between investigators, metabolomics laboratories and data coordinating centers, these data sets should provide a rich resource for the research community to enhance preclinical, clinical and translational research.
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
Webpage:
https://www.metabolomicsworkbench.org/Webpage
More detailed information about this field from each metasource.
https://www.metabolomicsworkbench.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://www.metabolomicsworkbench.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
Licence:
Name: Metabolomics Workbench Terms of UseLicence name
More detailed information about this field from each metasource.
Metabolomics Workbench Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Public Domain
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
Licence URL
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https://www.metabolomicsworkbench.org/about/termsofuse.php
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://www.metabolomicsworkbench.org/nihmetabolomics/datasharing.html
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
Publications:
Publications
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Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
PMID: 26467476
metasource: Fairsharing.org
version: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gkv1042
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
PMID: 26467476
metasource: Fairsharing.org
version: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gkv1042
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
PubMed citations: 201.
201 articles citing: Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
Metabolomic and proteomic profiling in bipolar disorder patients revealed potential molecular signatures related to hemostasis. PMID:35922643
A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics. PMID:35888710
Deep kernel learning improves molecular fingerprint prediction from tandem mass spectra. PMID:35758813
Just Add Data: automated predictive modeling for knowledge discovery and feature selection. PMID:35710826
Chemoresistant Cancer Cell Lines Are Characterized by Migratory, Amino Acid Metabolism, Protein Catabolism and IFN1 Signalling Perturbations. PMID:35681748
Fbxo7 promotes Cdk6 activity to inhibit PFKP and glycolysis in T cells. PMID:35670764
Comparative Metabolic Analysis Reveals a Metabolic Switch in Mature, Hydrated, and Germinated Pollen in Arabidopsis thaliana. PMID:35665175
Differential Accumulation of Metabolites and Transcripts Related to Flavonoid, Styrylpyrone, and Galactolipid Biosynthesis in Equisetum Species and Tissue Types. PMID:35629907
PI(18:1/18:1) is a SCD1-derived lipokine that limits stress signaling. PMID:35624087
Predicting T-cell quality during manufacturing through an artificial intelligence-based integrative multiomics analytical platform. PMID:35600660
IDSL.IPA Characterizes the Organic Chemical Space in Untargeted LC/HRMS Data Sets. PMID:35579321
Elevation of fatty acid desaturase 2 in esophageal adenocarcinoma increases polyunsaturated lipids and may exacerbate bile acid-induced DNA damage. PMID:35560527
Exploring synergies between plant metabolic modelling and machine learning. PMID:35521559
Serum NMR Profiling Reveals Differential Alterations in the Lipoproteome Induced by Pfizer-BioNTech Vaccine in COVID-19 Recovered Subjects and Naïve Subjects. PMID:35480886
Preclinical characterization and target validation of the antimalarial pantothenamide MMV693183. PMID:35444200
Effect of chronic and acute enterotoxigenic E. coli challenge on growth performance, intestinal inflammation, microbiome, and metabolome of weaned piglets. PMID:35323827
Multi-Omics Strategies for Investigating the Microbiome in Toxicology Research. PMID:35285497
Non-targeted metabolomics and associations with per- and polyfluoroalkyl substances (PFAS) exposure in humans: A scoping review. PMID:35231839
Reduced ER-mitochondria connectivity promotes neuroblastoma multidrug resistance. PMID:35211994
Cloud-based archived metabolomics data: A resource for in-source fragmentation/annotation, meta-analysis and systems biology. PMID:35190800
Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. PMID:35186042
Comparative metabolomics with Metaboseek reveals functions of a conserved fat metabolism pathway in C. elegans. PMID:35145075
Systems neuroimmunology: a review of multiomics methodologies to characterize neuroimmunological interactions in spinal and cranial diseases. PMID:35104798
Lipidomics Analysis of Outer Membrane Vesicles and Elucidation of the Inositol Phosphoceramide Biosynthetic Pathway in Bacteroides thetaiotaomicron. PMID:35080445
massNet: integrated processing and classification of spatially resolved mass spectrometry data using deep learning for rapid tumor delineation. PMID:35040929
THEM6-mediated reprogramming of lipid metabolism supports treatment resistance in prostate cancer. PMID:35014179
LCMD: Lung Cancer Metabolome Database. PMID:34976312
Urine-Based Metabolomics and Machine Learning Reveals Metabolites Associated with Renal Cell Carcinoma Stage. PMID:34944874
Lipidomic and Metabolomic Signature of Progression of Chronic Kidney Disease in Patients with Severe Obesity. PMID:34940593
Development of RIKEN Plant Metabolome MetaDatabase. PMID:34918130
Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics. PMID:34900668
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. PMID:34862502
Stable Isotopes for Tracing Cardiac Metabolism in Diseases. PMID:34859064
Sodium dichloroacetate stimulates cardiac mitochondrial metabolism and improves cardiac conduction in the ovine fetus during labor. PMID:34851727
Metabolites involved in purine degradation, insulin resistance, and fatty acid oxidation are associated with prediction of Gestational diabetes in plasma. PMID:34837546
Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management. PMID:34822415
Toward modeling metabolic state from single-cell transcriptomics. PMID:34785394
Prochlorococcus extracellular vesicles: molecular composition and adsorption to diverse microbes. PMID:34766712
Metabolomics in Exercise and Sports: A Systematic Review. PMID:34716906
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines. PMID:34694386
Pharmacometabolomics by NMR in Oncology: A Systematic Review. PMID:34681239
MSCAT: A Machine Learning Assisted Catalog of Metabolomics Software Tools. PMID:34677393
High-confidence structural annotation of metabolites absent from spectral libraries. PMID:34650271
Advancements in capturing and mining mass spectrometry data are transforming natural products research. PMID:34612288
Marine dissolved organic matter: a vast and unexplored molecular space. PMID:34536106
Control of topoisomerase II activity and chemotherapeutic inhibition by TCA cycle metabolites. PMID:34529934
The immunometabolite itaconate inhibits heme synthesis and remodels cellular metabolism in erythroid precursors. PMID:34492704
Metabolomics for personalized medicine: the input of analytical chemistry from biomarker discovery to point-of-care tests. PMID:34432105
Closing the gap between in vivo and in vitro omics: using QA/QC to strengthen ex vivo NMR metabolomics. PMID:34369014
Torsin and NEP1R1-CTDNEP1 phosphatase affect interphase nuclear pore complex insertion by lipid-dependent and lipid-independent mechanisms. PMID:34313336
DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution. PMID:34239103
Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. PMID:34239102
Guide to Semi-Quantitative Non-Targeted Screening Using LC/ESI/HRMS. PMID:34207787
Characterisation of the Antibiotic Profile of Lysobacter capsici AZ78, an Effective Biological Control Agent of Plant Pathogenic Microorganisms. PMID:34204563
Data Processing Thresholds for Abundance and Sparsity and Missed Biological Insights in an Untargeted Chemical Analysis of Blood Specimens for Exposomics. PMID:34178917
MassBase: A large-scaled depository of mass spectrometry datasets for metabolome analysis. PMID:34177338
Metabolome modulation of the host adaptive immunity in human malaria. PMID:34113019
Reinforcing one-carbon metabolism via folic acid/Folr1 promotes β-cell differentiation. PMID:34099692
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights. PMID:34019663
TOMATOMET: A metabolome database consists of 7118 accurate mass values detected in mature fruits of 25 tomato cultivars. PMID:33969254
UPLC-TOF-MS/MS-Based Metabolomics Analysis Reveals Species-Specific Metabolite Compositions in Pitchers of Nepenthes ampullaria, Nepenthes rafflesiana, and Their Hybrid Nepenthes × hookeriana. PMID:33968110
LipidSuite: interactive web server for lipidomics differential and enrichment analysis. PMID:33950258
Repository scale classification and decomposition of tandem mass spectral data. PMID:33859284
The History of Gene Hunting in Hereditary Spinocerebellar Degeneration: Lessons From the Past and Future Perspectives. PMID:33833777
The mwtab Python Library for RESTful Access and Enhanced Quality Control, Deposition, and Curation of the Metabolomics Workbench Data Repository. PMID:33808985
Parallel Multi-Omics in High-Risk Subjects for the Identification of Integrated Biomarker Signatures of Type 1 Diabetes. PMID:33806609
Toward the discovery of biological functions associated with the mechanosensor Mtl1p of Saccharomyces cerevisiae via integrative multi-OMICs analysis. PMID:33795741
The effects of birth weight and estimated breeding value for protein deposition on nitrogen efficiency in growing pigs. PMID:33780532
Multi-Omic Biomarkers as Potential Tools for the Characterisation of Pancreatic Cystic Lesions and Cancer: Innovative Patient Data Integration. PMID:33673153
Gestational long-term hypoxia induces metabolomic reprogramming and phenotypic transformations in fetal sheep pulmonary arteries. PMID:33624555
A community resource for paired genomic and metabolomic data mining. PMID:33589842
Pathway Tools Visualization of Organism-Scale Metabolic Networks. PMID:33499002
Areas of Metabolomic Exploration for Helminth Infections. PMID:33492932
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing. PMID:33362867
Research progress and perspective in metabolism and metabolomics of psoriasis. PMID:33237698
Toward the identification of a phytocannabinoid-like compound in the flowers of a South African medicinal plant (Leonotis leonurus). PMID:33172494
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. PMID:33169034
Mining Public Mass Spectrometry Data to Characterize the Diversity and Ubiquity of P. aeruginosa Specialized Metabolites. PMID:33167332
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data. PMID:33085002
Evaluation of the use of untargeted metabolomics in the safety assessment of genetically modified crops. PMID:33037482
A compromised developmental trajectory of the infant gut microbiome and metabolome in atopic eczema. PMID:33023370
Accurate Blood-Based Diagnostic Biosignatures for Alzheimer's Disease via Automated Machine Learning. PMID:32962113
A multi-omics approach to solving problems in plant disease ecology. PMID:32960892
Recommendations for standardizing nomenclature for dietary (poly)phenol catabolites. PMID:32936878
Insights into glucocorticoid responses derived from omics studies. PMID:32910934
Stirred suspension bioreactors maintain naïve pluripotency of human pluripotent stem cells. PMID:32895477
Food Phenotyping: Recording and Processing of Non-Targeted Liquid Chromatography Mass Spectrometry Data for Verifying Food Authenticity. PMID:32878155
Dependence of the Staphylococcal Volatilome Composition on Microbial Nutrition. PMID:32867100
Five Easy Metrics of Data Quality for LC-MS-Based Global Metabolomics. PMID:32865396
ReDU: a framework to find and reanalyze public mass spectrometry data. PMID:32807955
Addressing the batch effect issue for LC/MS metabolomics data in data preprocessing. PMID:32807888
20(S)-Protopanaxatriol promotes the binding of P53 and DNA to regulate the antitumor network via multiomic analysis. PMID:32642409
Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources. PMID:32429287
Pathway-Activity Likelihood Analysis and Metabolite Annotation for Untargeted Metabolomics Using Probabilistic Modeling. PMID:32375258
On the Use of Correlation and MI as a Measure of Metabolite-Metabolite Association for Network Differential Connectivity Analysis. PMID:32344593
NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data. PMID:32324219
New markers for sepsis caused by Pseudomonas aeruginosa during burn infection. PMID:32170472
Sting nematodes modify metabolomic profiles of host plants. PMID:32042018
Compartment and hub definitions tune metabolic networks for metabolomic interpretations. PMID:31972021
Metabolomic and Lipidomic Signatures of Metabolic Syndrome and its Physiological Components in Adults: A Systematic Review. PMID:31959772
Mass spectrometry searches using MASST. PMID:31894142
From Samples to Insights into Metabolism: Uncovering Biologically Relevant Information in LC-HRMS Metabolomics Data. PMID:31861212
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. PMID:31813964
Assessment of coverage for endogenous metabolites and exogenous chemical compounds using an untargeted metabolomics platform. PMID:31797630
A comparative evaluation of the generalised predictive ability of eight machine learning algorithms across ten clinical metabolomics data sets for binary classification. PMID:31728648
Creating a Reliable Mass Spectral-Retention Time Library for All Ion Fragmentation-Based Metabolomics. PMID:31717785
A Bioinformatics Guide to Plant Microbiome Analysis. PMID:31708944
Enzyme annotation in UniProtKB using Rhea. PMID:31688925
The metaRbolomics Toolbox in Bioconductor and beyond. PMID:31548506
Toward collaborative open data science in metabolomics using Jupyter Notebooks and cloud computing. PMID:31522294
LAS: A Lipid Annotation Service Capable of Explaining the Annotations It Generates. PMID:31462967
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop. PMID:31440979
The late stage of COPI vesicle fission requires shorter forms of phosphatidic acid and diacylglycerol. PMID:31363100
Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS). PMID:31319517
Delayed death in the malaria parasite Plasmodium falciparum is caused by disruption of prenylation-dependent intracellular trafficking. PMID:31318858
Correlations Between LC-MS/MS-Detected Glycomics and NMR-Detected Metabolomics in Caenorhabditis elegans Development. PMID:31316996
NIH workshop on human milk composition: summary and visions. PMID:31274142
NMR Spectroscopy for Metabolomics Research. PMID:31252628
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
Mass Spectrometry Data Repository Enhances Novel Metabolite Discoveries with Advances in Computational Metabolomics. PMID:31238512
Cheminformatics approach to exploring and modeling trait-associated metabolite profiles. PMID:31236709
Staring into the void: demystifying microbial metabolomics. PMID:31210257
MENDA: a comprehensive curated resource of metabolic characterization in depression. PMID:31157825
The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies. PMID:31155658
Continuous in vivo Metabolism by NMR. PMID:31114791
Accounting for biological variation with linear mixed-effects modelling improves the quality of clinical metabolomics data. PMID:31110642
Pseudomonas aeruginosa Alters Its Transcriptome Related to Carbon Metabolism and Virulence as a Possible Survival Strategy in Blood from Trauma Patients. PMID:31086830
Using Pathway Covering to Explore Connections among Metabolites. PMID:31052521
Changes in the Canine Plasma Lipidome after Short- and Long-Term Excess Glucocorticoid Exposure. PMID:30979907
Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome. PMID:30967866
Redox Systems Biology of Nutrition and Oxidative Stress. PMID:30949678
Application of metabolomics in viral pneumonia treatment with traditional Chinese medicine. PMID:30911327
Interoperable and scalable data analysis with microservices: applications in metabolomics. PMID:30851093
A Tool to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics. PMID:30841575
RANCM: a new ranking scheme for assigning confidence levels to metabolite assignments in NMR-based metabolomics studies. PMID:30830432
Metabolite and gene expression profiles suggest a putative mechanism through which high dietary carbohydrates reduce the content of hepatic betaine in Megalobrama amblycephala. PMID:30830423
Identification of bioactive metabolites using activity metabolomics. PMID:30814649
Metabolomics Approaches for the Diagnosis and Understanding of Kidney Diseases. PMID:30769897
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. PMID:30688441
Advances in the application of comprehensive two-dimensional gas chromatography in metabolomics. PMID:30662103
PhenoMeNal: processing and analysis of metabolomics data in the cloud. PMID:30535405
Metabolite changes in blood predict the onset of tuberculosis. PMID:30523338
Untargeted Molecular Discovery in Primary Metabolism: Collision Cross Section as a Molecular Descriptor in Ion Mobility-Mass Spectrometry. PMID:30449086
The Omics Revolution Continues: The Maturation of High-Throughput Biological Data Sources. PMID:30157526
Umbilical cord blood metabolomics reveal distinct signatures of dyslipidemia prior to bronchopulmonary dysplasia and pulmonary hypertension. PMID:30113229
Untargeted metabolomics analysis of ischemia-reperfusion-injured hearts ex vivo from sedentary and exercise-trained rats. PMID:30104954
LipidFinder on LIPID MAPS: peak filtering, MS searching and statistical analysis for lipidomics. PMID:30101336
Are microbiome studies ready for hypothesis-driven research? PMID:30059804
The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research. PMID:30003207
A decade after the metabolomics standards initiative it's time for a revision. PMID:29989594
Variable selection in omics data: A practical evaluation of small sample sizes. PMID:29927942
Metabolite extraction for high-throughput FTICR-MS-based metabolomics of grapevine leaves. PMID:29900113
Combining mechanism-based prediction with patient-based profiling for psoriasis metabolomics biomarker discovery. PMID:29854244
Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. PMID:29748461
A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository. PMID:29706851
Applications of metabolomics to study cancer metabolism. PMID:29702206
Cardiovascular Metabolomics. PMID:29700070
SECIMTools: a suite of metabolomics data analysis tools. PMID:29678131
Promises and pitfalls of untargeted metabolomics. PMID:29536203
Expanding the Coverage of the Metabolome with Nitrogen-Based NMR. PMID:29505241
When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors. PMID:29495643
A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it. PMID:29479297
RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites. PMID:29470400
Breathprinting Reveals Malaria-Associated Biomarkers and Mosquito Attractants. PMID:29415208
Beyond genomics: understanding exposotypes through metabolomics. PMID:29373992
Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data. PMID:29291722
Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry. PMID:29225718
Panomics for Precision Medicine. PMID:29217119
HMDB 4.0: the human metabolome database for 2018. PMID:29140435
Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets. PMID:29109515
LiverWiki: a wiki-based database for human liver. PMID:29029599
Compliance with minimum information guidelines in public metabolomics repositories. PMID:28949328
Systems-Level Annotation of a Metabolomics Data Set Reduces 25 000 Features to Fewer than 1000 Unique Metabolites. PMID:28914531
Navigating freely-available software tools for metabolomics analysis. PMID:28890673
Recommendations for Improving Identification and Quantification in Non-Targeted, GC-MS-Based Metabolomic Profiling of Human Plasma. PMID:28841195
Metabolomic Evaluation of the Consequences of Plasma Cystathionine Elevation in Adults with Stable Angina Pectoris. PMID:28794210
Exercise-Induced Alterations in Skeletal Muscle, Heart, Liver, and Serum Metabolome Identified by Non-Targeted Metabolomics Analysis. PMID:28786928
Metabolite Measurement: Pitfalls to Avoid and Practices to Follow. PMID:28654323
NOREVA: normalization and evaluation of MS-based metabolomics data. PMID:28525573
From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. PMID:28520864
Cancer progression by reprogrammed BCAA metabolism in myeloid leukaemia. PMID:28514443
A Web Service Framework for Interactive Analysis of Metabolomics Data. PMID:28514166
Identification of small molecules using accurate mass MS/MS search. PMID:28436590
Mass Spectral Feature List Optimizer (MS-FLO): A Tool To Minimize False Positive Peak Reports in Untargeted Liquid Chromatography-Mass Spectroscopy (LC-MS) Data Processing. PMID:28225594
Metabolomics: A Primer. PMID:28196646
Dimethyl Itaconate Is Not Metabolized into Itaconate Intracellularly. PMID:28188288
Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data. PMID:28137712
Recent Advances in NMR-Based Metabolomics. PMID:28105846
Global open data management in metabolomics. PMID:28092796
Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy. PMID:28090198
A complete workflow for high-resolution spectral-stitching nanoelectrospray direct-infusion mass-spectrometry-based metabolomics and lipidomics. PMID:28079878
Considerations when choosing a genetic model organism for metabolomics studies. PMID:28025166
Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis. PMID:27958387
Towards an open grapevine information system. PMID:27917288
Defective cholesterol metabolism in amyotrophic lateral sclerosis. PMID:27811233
Increasing rigor in NMR-based metabolomics through validated and open source tools. PMID:27643760
The future of NMR-based metabolomics. PMID:27580257
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. PMID:27504778
The Time Is Right to Focus on Model Organism Metabolomes. PMID:26891337
Bar Coding MS(2) Spectra for Metabolite Identification. PMID:26837423
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669 - http://dx.doi.org/10.1093/nar/gkv1042
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Tags
More detailed information about this field from each metasource.
metabolite
metasource: Fairsharing.org
version: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protocol
metasource: Fairsharing.org
version: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
bioinformatics
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
cell
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
cellular biology
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
chemical fingerprints
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
health
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
magnetic resonance spectrometry
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
mass spectrometry
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
metabolism
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
physiology
metasource: re3data.org
version: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
metabolite
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protocol
metasource: Fairsharing.orgversion: FAIRsharing.org: MW; Metabolomics Workbench; DOI: https://doi.org/10.25504/FAIRsharing.xfrgsf; Last edited: March 16, 2021, 1:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metabolic pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
bioinformatics
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
cell
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
cellular biology
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
chemical fingerprints
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
health
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
magnetic resonance spectrometry
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
mass spectrometry
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
metabolism
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
physiology
metasource: re3data.orgversion: re3data.org: UCSD Metabolomics Workbench; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31Q0B last accessed: 2022-11-04
metabolite protocol metabolic and signaling pathways metabolic and signaling pathways bioinformatics cell cellular biology chemical fingerprints health magnetic resonance spectrometry mass spectrometry metabolism physiology
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